Structure #35954

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	-
Position	43,883,889 - 43,884,008
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.31
Columns	120
Mean single MFE	-32.39
Consensus MFE	-25.99
Combinations/base pair	46 / 33 = 1.39
SCI	0.8
z-score	-2.26
RNA class probability	0.962065

This structure is part of cluster 17698

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.31
 Mean single sequence MFE: -32.39
 Consensus MFE: -25.99
 Energy contribution: -24.24
 Covariance contribution:  -1.75
 Mean z-score:  -2.26
 Structure conservation index:   0.80
 SVM decision value:   1.52
 SVM RNA-class probability: 0.962065
 Prediction: RNA

######################################################################

>hg17.chr11/43884008-43883889
UUCCUUUUCCAGCUUGUUUUUUUCAGUAUAGAAUUAAAACUAGCUGGGAAAAGAACCAGACUAAUCUUUGCAAACAGGAACACAAUGUAGUUUGAAAAGUACAACUGGGUUUGGGACAA
(((.((((((((((.(((((.(((......)))..))))).)))))))))).)))(((((((...((((.(((((..............))))).))))........)))))))..... ( -33.24)
>mm5.chr2/87799589-87799707
UUCCUUUUCUAGUUUGUUCUUCUGUAUAGAAUUAGAGUUAGAUGGGAGAACGAACCAAGCUACUCUUUGCAAACAGGGACACGAUAUAGCUUGGAAAGUACAACUGGGCUUGGGAUAA
.((((..((((((((((((((((((....(((....)))..)))))))))))).((((((((.((((((....)))))).......))))))))........))))))...))))... ( -34.50)
>rn3.chr3/92673408-92673526
UUCCUUUUCUAGUUUGCUCUUCUGUAUAGAAUUAGAGUUAGAUGGGGGAAAGAACCAGGCUAAUCUUUGCAAACAGGGACACUAUGUAGUAUGGAAAGAACAACUGGGCUUGGGAUAA
(((((..((((....((((((((....)))...)))))))))..))))).....(((((((..((((((....)))))).......((((.((.......)))))))))))))..... ( -29.40)
>canFam1.chr18/29710136-29710252
UUCCUUUUCCAGCUUGUUUUUCAGGAUAGAAUUAAAGCUAGCUGGGAAAAGAACCAGACUAAUCUUUACAGCAGAGACACGAUGCAUUUUGGAAAGUACAACUGGGUCUGGGACAA
.((((..(((((.((((((((((((((.....(((((.(((((((........)))).)))..)))))..(((.........)))))))))))))..)))))))))...))))... ( -32.40)
>consensus
UUCCUUUUCCAGCUUGUUCUUCU__GUAUAGAAUUAAAGCUAGAUGGGAAAA_GAACCAGACUAAUCUUUGCAAACAGGGACACGAUGUAGUUUGGAAAGUACAACUGGGCUUGGGACAA
....((((((((((.(((((((........))...))))).)))))))))).....(((((((...((((.(((((..............))))).))))........)))))))..... (-25.99 = -24.24 +  -1.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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