Structure #35955

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	+
Position	43,883,929 - 43,884,048
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	86.96
Columns	120
Mean single MFE	-29.72
Consensus MFE	-20.55
Combinations/base pair	43 / 37 = 1.16
SCI	0.69
z-score	-1.66
RNA class probability	0.609943

This structure is part of cluster 17698

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  86.96
 Mean single sequence MFE: -29.71
 Consensus MFE: -20.55
 Energy contribution: -22.36
 Covariance contribution:   1.81
 Mean z-score:  -1.66
 Structure conservation index:   0.69
 SVM decision value:   0.15
 SVM RNA-class probability: 0.609943
 Prediction: RNA

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>hg17.chr11/43883929-43884048
UCCUGUUUGCAAAGAUUAGUCUGGUUCUUUUCCCAGCUAGUUUUAAUUCUAUACUGAAAAAAACAAGCUGGAAAAGGAACUACAAAAGCCAUUUGGCAGGCUGCUAUUUCUCUGUCGGU
..(((...(((.(((.(((((((((((((((.((((((.(((((..(((......))).))))).)))))).)))))))))......(((....))))))))).....))).)))))). ( -37.50)
>mm5.chr2/87799747-87799629
CCCUGUUUGCAAAGAGUAGCUUGGUUCGUUCUCCCAUCUAACUCUAAUUCUAUACAGAAGAACAAACUAGAAAAGGAACUACAAAAGCCGCUUGGCAGGCUGCUAUUUCUCUGUCGGU
....((((((...(((..((((.....(((((....((((.......((((....))))........))))...))))).....))))..))).)))))).................. ( -24.36)
>rn3.chr3/92673566-92673448
CCCUGUUUGCAAAGAUUAGCCUGGUUCUUUCCCCCAUCUAACUCUAAUUCUAUACAGAAGAGCAAACUAGAAAAGGAACUAUAAAAGCCGCUUGGCAGGCUGCUAUUUCUCUGUCGGU
..(((...(((.(((.((((((((((((((...........((((...(((....)))))))..........))))))))......(((....))))))))).....))).)))))). ( -24.00)
>canFam1.chr18/29710292-29710176
CUCUGCUGUAAAGAUUAGUCUGGUUCUUUUCCCAGCUAGCUUUAAUUCUAUCCUGAAAAACAAGCUGGAAAAGGAACUACAAAAGCCAUUUGGCAGGCUGCUAUUUCUCUGUCGGU
....((((((.(((.(((((((((((((((.((((((.(.(((..(((......))))))).)))))).)))))))))......(((....))))))))).....))).)).)))) ( -33.00)
>consensus
CCCUGUUUGCAAAGAUUAGCCUGGUUC_UUCUCCCAGCUAACUCUAAUUCUAUAC__AGAAAAACAAACUAGAAAAGGAACUACAAAAGCCACUUGGCAGGCUGCUAUUUCUCUGUCGGU
......(((((.(((.(((((((((((.((((((.((((.(((((...............))))).)))))))))).)))))......(((....))))))))).....))).)).))). (-20.55 = -22.36 +   1.81)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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