Structure #35956
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr11 |
| Strand | - |
| Position | 43,883,929 - 43,884,048 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 86.96 |
| Columns | 120 |
| Mean single MFE | -32.25 |
| Consensus MFE | -26.21 |
| Combinations/base pair | 45 / 35 = 1.29 |
| SCI | 0.81 |
| z-score | -1.83 |
| RNA class probability | 0.827552 |
This structure is part of cluster 17698
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 86.96 Mean single sequence MFE: -32.25 Consensus MFE: -26.21 Energy contribution: -24.53 Covariance contribution: -1.69 Mean z-score: -1.83 Structure conservation index: 0.81 SVM decision value: 0.70 SVM RNA-class probability: 0.827552 Prediction: RNA ###################################################################### >hg17.chr11/43884048-43883929 ACCGACAGAGAAAUAGCAGCCUGCCAAAUGGCUUUUGUAGUUCCUUUUCCAGCUUGUUUUUUUCAGUAUAGAAUUAAAACUAGCUGGGAAAAGAACCAGACUAAUCUUUGCAAACAGGA .((..((((((.((((.((((........)))).)))).((((.((((((((((.(((((.(((......)))..))))).)))))))))).))))........))))))......)). ( -36.70) >mm5.chr2/87799629-87799747 ACCGACAGAGAAAUAGCAGCCUGCCAAGCGGCUUUUGUAGUUCCUUUUCUAGUUUGUUCUUCUGUAUAGAAUUAGAGUUAGAUGGGAGAACGAACCAAGCUACUCUUUGCAAACAGGG .((..((((((..((((((((.((...))))))..................((((((((((((((....(((....)))..))))))))))))))...)))).))))))......)). ( -31.20) >rn3.chr3/92673448-92673566 ACCGACAGAGAAAUAGCAGCCUGCCAAGCGGCUUUUAUAGUUCCUUUUCUAGUUUGCUCUUCUGUAUAGAAUUAGAGUUAGAUGGGGGAAAGAACCAGGCUAAUCUUUGCAAACAGGG .((..((((((..((((((((.((...))))))......((((.((..((.((((((((((((....)))...)))).))))).))..)).))))...)))).))))))......)). ( -30.10) >canFam1.chr18/29710176-29710292 ACCGACAGAGAAAUAGCAGCCUGCCAAAUGGCUUUUGUAGUUCCUUUUCCAGCUUGUUUUUCAGGAUAGAAUUAAAGCUAGCUGGGAAAAGAACCAGACUAAUCUUUACAGCAGAG ......(((((.((((.((((........)))).)))).((((.((((((((((.(((((((......))...))))).)))))))))).))))........)))))......... ( -31.00) >consensus ACCGACAGAGAAAUAGCAGCCUGCCAAACGGCUUUUGUAGUUCCUUUUCCAGCUUGUUCUUCU__GUAUAGAAUUAAAGCUAGAUGGGAAAA_GAACCAGACUAAUCUUUGCAAACAGGG ...(.((((((.((((.((((........)))).)))).((((..(((((((((.(((((((........))...))))).)))))))))...))))........)))))))........ (-26.21 = -24.53 + -1.69)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
