Structure #37198

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	+
Position	62,444,710 - 62,444,825
Number of sequences	5
Organisms	human, mouse, rat, dog, zebrafish
Mean pairwise identity	64.61
Columns	120
Mean single MFE	-43.86
Consensus MFE	-19.95
Combinations/base pair	40 / 28 = 1.43
SCI	0.45
z-score	-2.28
RNA class probability	0.980893

This structure is part of cluster 18316

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  64.61
 Mean single sequence MFE: -43.86
 Consensus MFE: -19.95
 Energy contribution: -21.84
 Covariance contribution:   1.89
 Mean z-score:  -2.28
 Structure conservation index:   0.45
 SVM decision value:   1.87
 SVM RNA-class probability: 0.980893
 Prediction: RNA

######################################################################

>hg17.chr11/62444710-62444825
UGACACCCACCUUGGCUUCUAGCUUCUCUAUCUGGCCAGCAGCCUGAUUCAGUCCAUCUUGGGGGAGCUGAGGUGGACGGGGGUGGUGGGUUUCAGGGUGCCCUGAGGGAGGACA
....(((((((..((((.((.(((.........))).)).))))..((((.((((((((..(.....)..))))))))..)))))))))))((((((....))))))........ ( -48.90)
>mm5.chr19/52924889-52924771
CAACACCCACCUUGGCAUCCAGCUUGUCCAUCUGGCCAGCAGCCUCAUUCAAUCCAUCUUGGGGGGCUGAAGGUGGAUAGGGGAGGUAGGAUUCAGGGUUUCCUGAAGGAGGAGAGAA
......(((((((((.((((.((((.((((((((.((..(((((((...(((......))).)))))))..))))))).))).)))).))))))))))).(((....)))))...... ( -45.60)
>rn3.chr1/56624285-56624178
CAACACCCACCUUGGCAUCCAGCUUGUCCAUCUGGCCAGCAGCCUCAUUCAAUCCGUCUUGGGGGGCUGAAGGUGGGUAGGGGAGGUAGGAUUCAGGGUUUCCUGAA
........(((((((.((((.((((.(((..((.(((..(((((((...(((......))).)))))))..))).))..))).)))).)))))))))))........ ( -42.50)
>canFam1.chr18/2029741-2029623
UAAUACCCACCUUGGCAUCCAGCUUGUCCAUCUGGCCAGCAACCUGAUUCAGUCCAUCUUGGGGGGACUGGAAAUGGAUGGGGUGGUGGGAUUCAGGGUUCCCUGAAGGAGAAGAGGA
.....((((((....(((((((((.(((.....))).))).......((((((((.((....))))))))))..))))))....)))))).((((((....))))))........... ( -46.90)
>danRer1.chrNA/309252462-309252563
CUCCACCUAGUUGCCUCUGACCCCAGCAAGCUACCCAGGGGCCCACCUCUCUCCCUGGACUUGCAAUAGAGGCCCUAGGGUACCUUCUGGCCCUCCGCCUA
.....(((((..(((((((......(((((....(((((((..........))))))).)))))..))))))).))))).........(((.....))).. ( -35.40)
>consensus
CAACACCCACCUUGGCAUCCAGCUUGUCCAUCUGGCCAGCAGCCUCAUUCAAUCCAUCUUGGGGGG_CUGGAGGUGGAU_GGGGAGGUAGGAUUCAGGGUUCCCUGAAGGAGGA_G__AA
.....((.(((..........(((.(((.....))).)))...........(((((((((.((....)).)))))))))......))).)).((((((....))))))............ (-19.95 = -21.84 +   1.89)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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