Structure #37206

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	+
Position	62,444,750 - 62,444,858
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	74.17
Columns	119
Mean single MFE	-46.06
Consensus MFE	-37.79
Combinations/base pair	44 / 32 = 1.38
SCI	0.82
z-score	-3.72
RNA class probability	0.999978

This structure is part of cluster 18316

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 119
 Columns: 119
 Strand: +
 Mean pairwise identity:  74.17
 Mean single sequence MFE: -46.06
 Consensus MFE: -37.79
 Energy contribution: -36.92
 Covariance contribution:  -0.87
 Mean z-score:  -3.72
 Structure conservation index:   0.82
 SVM decision value:   5.20
 SVM RNA-class probability: 0.999978
 Prediction: RNA

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>hg17.chr11/62444750-62444858
AGCCUGAUUCAGUCCAUCUUGGGGGAGCUGAGGUGGACGGGGGUGGUGGGUUUCAGGGUGCCCUGAGGGAGGACAGGAGGUUCUGGGACUGGCACCCCCAUCAAGAUG
....((((...((((((((..(.....)..))))))))(((((((.(.(((..(((..(..((((........))))..)..)))..))).))))))))))))..... ( -53.00)
>mm5.chr19/52924925-52924811
AGCCUCAUUCAAUCCAUCUUGGGGGGCUGAAGGUGGAUAGGGGAGGUAGGAUUCAGGGUUUCCUGAAGGAGGAGAGAAGGAGGCUCUGGGACUGGUGUCCCCAAAAGUAUGUAC
.(((((.(((.(((((((((.((...)).))))))))).)))))))).((...(((((((((((.............)))))))))))((((....))))))............ ( -43.92)
>rn3.chr1/56624321-56624218
AGCCUCAUUCAAUCCGUCUUGGGGGGCUGAAGGUGGGUAGGGGAGGUAGGAUUCAGGGUUUCCUGAAGGAGGCUCUGGGACUGGUGUCCCCAAAAGUAUGUAC
.((((..((((..((.(....).))..))))...)))).(((((.(..((.((((((((((((....)))))))))))).))..).)))))............ ( -42.10)
>canFam1.chr18/2029778-2029663
AACCUGAUUCAGUCCAUCUUGGGGGGACUGGAAAUGGAUGGGGUGGUGGGAUUCAGGGUUCCCUGAAGGAGAAGAGGAGGAGAUUCUGGGACUGGCACCCCAAUGUCGAAGGGGG
..(((..(((.((((((.((.((....)).)).))))))((((((.(((..((((((((..(((.............)))..)))))))).))).))))))......)))..))) ( -45.22)
>consensus
AGCCUCAUUCAAUCCAUCUUGGGGGG_CUGAAGGUGGAUAGGGGAGGUAGGAUUCAGGGUUCCCUGAAGGAGGA___AAGGAGGCUCUGGGACUGGCACCCCCAA____AAGGAUG___
...........(((((((((.((....)).))))))))).((((((.(((...((((((((((((.............))))))))))))..))).))))))................. (-37.79 = -36.92 +  -0.87)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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