Structure #37211

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	-
Position	62,444,750 - 62,444,858
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	74.17
Columns	119
Mean single MFE	-31.4
Consensus MFE	-18.92
Combinations/base pair	30 / 24 = 1.25
SCI	0.6
z-score	-3.24
RNA class probability	0.999896

This structure is part of cluster 18316

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 119
 Columns: 119
 Strand: +
 Mean pairwise identity:  74.17
 Mean single sequence MFE: -31.40
 Consensus MFE: -18.92
 Energy contribution: -19.30
 Covariance contribution:   0.38
 Mean z-score:  -3.24
 Structure conservation index:   0.60
 SVM decision value:   4.43
 SVM RNA-class probability: 0.999896
 Prediction: RNA

######################################################################

>hg17.chr11/62444858-62444750
CAUCUUGAUGGGGGUGCCAGUCCCAGAACCUCCUGUCCUCCCUCAGGGCACCCUGAAACCCACCACCCCCGUCCACCUCAGCUCCCCCAAGAUGGACUGAAUCAGGCU
...(((((((((((((.......(((......))).......(((((....))))).......))))))).......((((.(((........))))))))))))).. ( -35.10)
>mm5.chr19/52924811-52924925
GUACAUACUUUUGGGGACACCAGUCCCAGAGCCUCCUUCUCUCCUCCUUCAGGAAACCCUGAAUCCUACCUCCCCUAUCCACCUUCAGCCCCCCAAGAUGGAUUGAAUGAGGCU
.............(((((....)))))..((((((.(((........((((((....)))))).............(((((.(((.........))).))))).))).)))))) ( -32.00)
>rn3.chr1/56624218-56624321
GUACAUACUUUUGGGGACACCAGUCCCAGAGCCUCCUUCAGGAAACCCUGAAUCCUACCUCCCCUACCCACCUUCAGCCCCCCAAGACGGAUUGAAUGAGGCU
.............(((((....)))))..((((((.((((((....))))))....................((((..((........))..)))).)))))) ( -28.90)
>canFam1.chr18/2029663-2029778
CCCCCUUCGACAUUGGGGUGCCAGUCCCAGAAUCUCCUCCUCUUCUCCUUCAGGGAACCCUGAAUCCCACCACCCCAUCCAUUUCCAGUCCCCCCAAGAUGGACUGAAUCAGGUU
...(((.......(((((((........((((..........))))..((((((....))))))......)))))))........((((((.........))))))....))).. ( -29.60)
>consensus
___CAUACUU____AUGGGGACACCAGUCCCAGAACCUCCUU___UCCUCCUUCAGGAAACCCUGAAUCCCACCACCCCUAUCCACCUCCAG_CCCCCCAAGAUGGACUGAAUCAGGCU
.................(((((....)))))..((((((.............(((((....)))))............(.(((((.((............)).))))).)...)))))) (-18.92 = -19.30 +   0.38)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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