Structure #37217
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr11 |
| Strand | + |
| Position | 62,444,789 - 62,444,894 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, zebrafish |
| Mean pairwise identity | 61.15 |
| Columns | 120 |
| Mean single MFE | -41.65 |
| Consensus MFE | -17.14 |
| Combinations/base pair | 40 / 28 = 1.43 |
| SCI | 0.41 |
| z-score | -1.99 |
| RNA class probability | 0.85401 |
This structure is part of cluster 18316
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 61.15 Mean single sequence MFE: -41.65 Consensus MFE: -17.14 Energy contribution: -18.74 Covariance contribution: 1.60 Mean z-score: -1.99 Structure conservation index: 0.41 SVM decision value: 0.80 SVM RNA-class probability: 0.854010 Prediction: RNA ###################################################################### >hg17.chr11/62444789-62444894 GGGGUGGUGGGUUUCAGGGUGCCCUGAGGGAGGACAGGAGGUUCUGGGACUGGCACCCCCAUCAAGAUGGGGGUCAACCUCCCACAGGAUGCUGGUGGCAAGGGC (((((.((.(((..(((..(..((((........))))..)..)))..))).))((((((((....))))))))..)))))((((((....)).))))....... ( -45.90) >mm5.chr19/52924963-52924850 GGGGAGGUAGGAUUCAGGGUUUCCUGAAGGAGGAGAGAAGGAGGCUCUGGGACUGGUGUCCCCAAAAGUAUGUACAUGGGGUCACUCUUCAACUAGGUGCUGGUAGCCAGGGC (((((.(..((.(((((((((((((.............))))))))))))).))..).)))))...(((((.((..(((((.....)))))..)).)))))....((....)) ( -39.22) >rn3.chr1/56624359-56624257 GGGGAGGUAGGAUUCAGGGUUUCCUGAAGGAGGCUCUGGGACUGGUGUCCCCAAAAGUAUGUACAUGGGGUCACUCGUCAACUGGAUGCUGGUGGCCAGGGC (((((.(..((.((((((((((((....)))))))))))).))..).)))))................(((((((((((.....))))..)))))))..... ( -42.60) >canFam1.chr18/2029814-2029702 GGGGUGGUGGGAUUCAGGGUUCCCUGAAGGAGAAGAGGAGGAGAUUCUGGGACUGGCACCCCAAUGUCGAAGGGGGGGUGUCAACCUCCCACGGGAUGCUGGUGGCAAGGGC ((((((.(((..((((((((..(((.............)))..)))))))).))).))))))..(((((...(((((((....))))))).(((....))).)))))..... ( -45.12) >danRer1.chrNA/309252531-309252627 GGCCCUAGGGUACCUUCUGGCCCUCCGCCUAGGGGCCUCUGACCCCAGCAAGCUACCCAAGGGUCCACAACUCCCCCUGGACUUGCAGUAGAGGC ((((((.(((((.((((((((.....)))..((((.......)))))).))).))))).)))))).....(((...(((......)))..))).. ( -35.40) >consensus GGGGAGGUAGGAUUCAGGGUUCCCUGAAGGAGGA_G__AAGGAGGCUCUGGGACUGGCACCCCCAA____AAGGAUG__CA_GGGGUCAAC__CUCCCACUGGAUGCUGGUGGCAAGGGC ((((.(.(((...((((((((((((..............))))))))))))..))).).)))).....................(((((.....(((....)))......)))))..... (-17.14 = -18.74 + 1.60)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
