Structure #37522

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	-
Position	64,195,326 - 64,195,446
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	87.03
Columns	120
Mean single MFE	-26.28
Consensus MFE	-18.38
Combinations/base pair	28 / 27 = 1.04
SCI	0.7
z-score	-3.04
RNA class probability	0.951542

This structure is part of cluster 18443

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  87.03
 Mean single sequence MFE: -26.27
 Consensus MFE: -18.38
 Energy contribution: -20.12
 Covariance contribution:   1.75
 Mean z-score:  -3.04
 Structure conservation index:   0.70
 SVM decision value:   1.39
 SVM RNA-class probability: 0.951542
 Prediction: RNA

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>hg17.chr11/64195446-64195326
UGUCUGGACUUUGAUUCGUCUGAGGGAACAGUCGGGUUUUACUAAUCUAAGUCAUCUCCCUCCUUGCCUUCCCCAGAGACCUUCCUCCAUUCCCUCUACCCUUGGCUUCCUUUCCACCCA
.(((.((((........))))(((((((.((..(((....(((......))).....)))..))...........(((......)))..))))))).......))).............. ( -22.50)
>mm5.chr19/54430387-54430502
UGUCUGGACUGAUUUGUCUGAGGGAACAGUGGGUUUACUAAUCUAAGUCACCUCCCUCCCUGCCUUCCCCAGACACCUUCCUCCAGUCCCUCUAUCUCCACUUCCUCUCCACCCA
.(.(((((..((..((((((.((((((((.(((...(((......))).....)))...)))..)))))))))))..))..))))).)........................... ( -30.20)
>rn3.chr1/58710726-58710842
UGUCUGGACUGAUUUGUCUGAGGGAACAGUCGGGUUUUACUAAUCUAAGUCAUCUCCCUCCCUGCCUUCCCCAGACACCUUCCUCCAGUUCCUCUAUCUCCACUUCCUCCUACCCA
...(((((..((..((((((.((((((((..(((....(((......))).....)))...)))..)))))))))))..))..)))))............................ ( -29.50)
>canFam1.chr18/3340995-3341115
UGUCUGGACUUUGAUUUGUCGGAGGGAACAGUUGGGUUUUACUAAUCUCCGUCAUCUCCCUCCUUGCCUUCCCCAGAGACUGUCCUCCAUUUCCCCUACUCUCAGCUUCCUUUCUACCCA
.....((((.....((((..((((((...((..(((....((........)).....)))..))..)))))).))))....))))................................... ( -22.90)
>consensus
UGUCUGGACU__GAUUUGUCUGAGGGAACAGUCGGGUUUUACUAAUCUAAGUCAUCUCCCUCCCUGCCUUCCCCAGACACCUUCCUCCAGUCCCUCUACC_UCCACUUCCUCUCCACCCA
...(((((....((..((((((.((((((((..(((....(((......))).....)))...)))..)))))))))))...)).))))).............................. (-18.38 = -20.12 +   1.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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