Structure #37532

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	-
Position	64,195,406 - 64,195,525
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	91.88
Columns	120
Mean single MFE	-43.85
Consensus MFE	-32.66
Combinations/base pair	40 / 37 = 1.08
SCI	0.74
z-score	-2.36
RNA class probability	0.753885

This structure is part of cluster 18443

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  91.88
 Mean single sequence MFE: -43.85
 Consensus MFE: -32.66
 Energy contribution: -33.60
 Covariance contribution:   0.94
 Mean z-score:  -2.36
 Structure conservation index:   0.74
 SVM decision value:   0.48
 SVM RNA-class probability: 0.753885
 Prediction: RNA

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>hg17.chr11/64195525-64195406
CAUGAACCCCUGGGGUGGAGGGGGACCGGGGGAAUUAUUCCCCUGUUUCCUGCUUUUACUAACGAACCUGCCAUUUUUGUGUCUGGACUUUGAUUCGUCUGAGGGAACAGUCGGGUUUU
...((((((((((((((((((((((.(((((((.....))))))).))))........(....)..))).))))))((.(.((.((((........)))))).).)))))..)))))). ( -38.90)
>mm5.chr19/54430466-54430580
CAAGAACCCCUGGGGUGGAGGGGGGCAGGGGAAUUAUUCCCCUGUUUCCUGCUUUUACUAACGAACCUGCCAUUUUUGUGUCUGGACUGAUUUGUCUGAGGGAACAGUGGGUUU
...(((((((((.((..(.(((..((((((((.....))))))))..))).......(....)...)..))....((.(.((.((((......)))))).).))))).)))))) ( -45.60)
>rn3.chr1/58710804-58710920
CAAGAACCCCUGGGGUGGAGGGGGCAGGGGAAUUAUUUCCCCUGUUUCCUGCUUUUACUAACGAACCUGCCAUUUUUGUGUCUGGACUGAUUUGUCUGAGGGAACAGUCGGGUUUU
..((((((((((.((..((((..(((((((((....)))))))))..))).......(....)...)..))....((.(.((.((((......)))))).).)))))..))))))) ( -45.70)
>canFam1.chr18/3341075-3341193
CACGAACCCCUGGGGUGGAGGGGGACGGGGGAAAUACUCCCCUGUUUCCUGCUUUUACUAACGAACCCGCCAUUUUUGUGUCUGGACUUUGAUUUGUCGGAGGGAACAGUUGGGUUUU
...(((((((((.(((((.(((..((((((((.....))))))))..))).......(....)...)))))....((.(.((((.((........)))))).).)))))..)))))). ( -45.20)
>consensus
CAAGAACCCCUGGGGUGGAGGGGGAC_AGGGGAAUUAUU_CCCCUGUUUCCUGCUUUUACUAACGAACCUGCCAUUUUUGUGUCUGGACU__GAUUUGUCUGAGGGAACAGUCGGGUUUU
...(((((((((.((((((((((((.((((((........)))))).))))..))))))))......(((..(((....)))...((((........))))..)))..)))..)))))). (-32.66 = -33.60 +   0.94) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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