Structure #37535

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	+
Position	64,195,446 - 64,195,564
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	90.78
Columns	120
Mean single MFE	-35.45
Consensus MFE	-30.46
Combinations/base pair	22 / 21 = 1.05
SCI	0.86
z-score	-2.06
RNA class probability	0.932723

This structure is part of cluster 18443

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  90.78
 Mean single sequence MFE: -35.45
 Consensus MFE: -30.46
 Energy contribution: -30.27
 Covariance contribution:  -0.19
 Mean z-score:  -2.06
 Structure conservation index:   0.86
 SVM decision value:   1.22
 SVM RNA-class probability: 0.932723
 Prediction: RNA

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>hg17.chr11/64195446-64195564
CAAAAAUGGCAGGUUCGUUAGUAAAAGCAGGAAACAGGGGAAUAAUUCCCCCGGUCCCCCUCCACCCCAGGGGUUCAUGAUGCCCCUGCCCCCCAACCUCCCCCCCACGCAUCUUCUG
.......((((((..(((((.........(....).(((((.....)))))..(..(((((.......)))))..).)))))..))))))............................ ( -34.00)
>mm5.chr19/54430620-54430502
CAAAAAUGGCAGGUUCGUUAGUAAAAGCAGGAAACAGGGGAAUAAUUCCCCUGCCCCCCUCCACCCCAGGGGUUCUUGAUGCCCCUGCCCCCCAACCCCUCCCCCCAUGAAGCUUCUG
.......((((((..((((((.....((.(....)((((((.....)))))))).(((((.......)))))...))))))..))))))............................. ( -36.20)
>rn3.chr1/58710960-58710842
CAAAAAUGGCAGGUUCGUUAGUAAAAGCAGGAAACAGGGGAAAUAAUUCCCCUGCCCCCUCCACCCCAGGGGUUCUUGAUGCCCCUGCCCCCCAAACCCCCCCCCCAUGAAGCUUCUU
.......((((((..((((((.....((.(....)(((((((....)))))))))(((((.......)))))...))))))..))))))............................. ( -37.10)
>canFam1.chr18/3341233-3341115
CAAAAAUGGCGGGUUCGUUAGUAAAAGCAGGAAACAGGGGAGUAUUUCCCCCGUCCCCCUCCACCCCAGGGGUUCGUGAUGCCCCUGCCCCCCAACCCCCCUCCCUGUGCAGCUUCUG
.......((((((..(((((.........(....).((((((...))))))((..(((((.......)))))..)))))))..))))))............................. ( -34.50)
>consensus
CAAAAAUGGCAGGUUCGUUAGUAAAAGCAGGAAACAGGGG_AAUAAUUCCCCC_GUCCCCCUCCACCCCAGGGGUUCUUGAUGCCCCUGCCCCCCAACCCCCCCCCCCAUGAAGCUUCUG
.......((((((..(((((.........(....).((((........)))).....(((((.......)))))....)))))..))))))............................. (-30.46 = -30.27 +  -0.19)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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