Structure #37539

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	-
Position	64,195,446 - 64,195,564
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	90.78
Columns	120
Mean single MFE	-51.57
Consensus MFE	-39.1
Combinations/base pair	38 / 34 = 1.12
SCI	0.76
z-score	-2.88
RNA class probability	0.914537

This structure is part of cluster 18443

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  90.78
 Mean single sequence MFE: -51.58
 Consensus MFE: -39.10
 Energy contribution: -39.35
 Covariance contribution:   0.25
 Mean z-score:  -2.88
 Structure conservation index:   0.76
 SVM decision value:   1.10
 SVM RNA-class probability: 0.914537
 Prediction: RNA

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>hg17.chr11/64195564-64195446
CAGAAGAUGCGUGGGGGGGAGGUUGGGGGGCAGGGGCAUCAUGAACCCCUGGGGUGGAGGGGGACCGGGGGAAUUAUUCCCCUGUUUCCUGCUUUUACUAACGAACCUGCCAUUUUUG
..(((((((.(..((..((((((.(((..(((((((.((.((...(((((((............))))))).)).)).)))))))..))))))))).(....)..))..)))))))). ( -50.10)
>mm5.chr19/54430502-54430620
CAGAAGCUUCAUGGGGGGAGGGGUUGGGGGGCAGGGGCAUCAAGAACCCCUGGGGUGGAGGGGGGCAGGGGAAUUAUUCCCCUGUUUCCUGCUUUUACUAACGAACCUGCCAUUUUUG
..........((((.((((((((((..(..((....))..)...)))))))..(((((((((..((((((((.....))))))))..)))...))))))......))).))))..... ( -49.50)
>rn3.chr1/58710842-58710960
AAGAAGCUUCAUGGGGGGGGGGUUUGGGGGGCAGGGGCAUCAAGAACCCCUGGGGUGGAGGGGGCAGGGGAAUUAUUUCCCCUGUUUCCUGCUUUUACUAACGAACCUGCCAUUUUUG
......(((....)))((.(((((((..((.((((((.........))))))....(.(((..(((((((((....)))))))))..))).).....))..))))))).))....... ( -54.40)
>canFam1.chr18/3341115-3341233
CAGAAGCUGCACAGGGAGGGGGGUUGGGGGGCAGGGGCAUCACGAACCCCUGGGGUGGAGGGGGACGGGGGAAAUACUCCCCUGUUUCCUGCUUUUACUAACGAACCCGCCAUUUUUG
...........((((((((.(((((.(....((((((.........)))))).(((((((((..((((((((.....))))))))..)))...))))))..).))))).)).)))))) ( -52.30)
>consensus
CAGAAGCUGCAUGGGGGGGGGGGUUGGGGGGCAGGGGCAUCAAGAACCCCUGGGGUGGAGGGGGAC_AGGGGAAUUAUU_CCCCUGUUUCCUGCUUUUACUAACGAACCUGCCAUUUUUG
...................((((.(((.(((((((((.........)))))).((((((((((((.((((((........)))))).))))..))))))))......))).))).)))). (-39.10 = -39.35 +   0.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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