Structure #37540

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	+
Position	64,195,485 - 64,195,604
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	87.43
Columns	120
Mean single MFE	-66
Consensus MFE	-53.42
Combinations/base pair	40 / 37 = 1.08
SCI	0.81
z-score	-3.96
RNA class probability	0.993506

This structure is part of cluster 18443

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  87.43
 Mean single sequence MFE: -66.00
 Consensus MFE: -53.42
 Energy contribution: -54.30
 Covariance contribution:   0.88
 Mean z-score:  -3.96
 Structure conservation index:   0.81
 SVM decision value:   2.40
 SVM RNA-class probability: 0.993506
 Prediction: RNA

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>hg17.chr11/64195485-64195604
AAUAAUUCCCCCGGUCCCCCUCCACCCCAGGGGUUCAUGAUGCCCCUGCCCCCCAACCUCCCCCCCACGCAUCUUCUGGAAGGGGUGGGGCCGGUGGGGGAGGAGGGAAGGGAGGGGG
.......(((((..(((((((((....(((((((.......))))))).((((((.((.(((((((...(........)...))).))))..)))))))).))))))..))).))))) ( -66.20)
>mm5.chr19/54430660-54430541
AAUAAUUCCCCUGCCCCCCUCCACCCCAGGGGUUCUUGAUGCCCCUGCCCCCCAACCCCUCCCCCCAUGAAGCUUCUGGAAGGGGUGGGGCCAGCAGGGGAGGAGGGGAGGAAGGGAG
........((((.(((((((((.((((((((((.......))))))((.(((((.(((((....(((.((....))))).))))))))))...)).)))).))))))).)).)))).. ( -67.80)
>rn3.chr1/58711000-58710882
AAAUAAUUCCCCUGCCCCCUCCACCCCAGGGGUUCUUGAUGCCCCUGCCCCCCAAACCCCCCCCCCAUGAAGCUUCUUGAAGGGGUGGGGCCAGCAGGGGAGGAGGGGAGGAAGGGAG
.......((((.(.((((((((....(((((((.......))))))).((((......((((((((.(.(((...))).).)))).))))......)))).))))))).).).)))). ( -60.60)
>canFam1.chr18/3341272-3341154
AGUAUUUCCCCCGUCCCCCUCCACCCCAGGGGUUCGUGAUGCCCCUGCCCCCCAACCCCCCUCCCUGUGCAGCUUCUGGAAGGGGUGGGGCCGGCGGGGGAGGAGGGCAGGGGGGGG
....(..(((((((((.(((((.(((.((((((.......))))))((((((((.((((..(((..(........).))).)))))))))..))))))))))).)))).)))))..) ( -69.40)
>consensus
_AAUAAUUCCCCC_GUCCCCCUCCACCCCAGGGGUUCUUGAUGCCCCUGCCCCCCAACCCCCCCCCCCAUGAAGCUUCUGGAAGGGGUGGGGCCAGCAGGGGAGGAGGGGAGGAAGGGAG
........(((((...((((((((.((((((((((.......))))))((((((((.((((...((.............))..)))))))))..))).)))).))))))..))..))))) (-53.42 = -54.30 +   0.88)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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