Structure #37543

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	-
Position	64,195,485 - 64,195,604
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	87.43
Columns	120
Mean single MFE	-70.08
Consensus MFE	-61.06
Combinations/base pair	45 / 39 = 1.15
SCI	0.87
z-score	-4.31
RNA class probability	0.996433

This structure is part of cluster 18443

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  87.43
 Mean single sequence MFE: -70.08
 Consensus MFE: -61.06
 Energy contribution: -61.12
 Covariance contribution:   0.06
 Mean z-score:  -4.31
 Structure conservation index:   0.87
 SVM decision value:   2.70
 SVM RNA-class probability: 0.996433
 Prediction: RNA

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>hg17.chr11/64195604-64195485
CCCCCUCCCUUCCCUCCUCCCCCACCGGCCCCACCCCUUCCAGAAGAUGCGUGGGGGGGAGGUUGGGGGGCAGGGGCAUCAUGAACCCCUGGGGUGGAGGGGGACCGGGGGAAUUAUU
((((((((((..((.(((.((((.((((((((.(((((.(((.....)).).))))))).))))))))))((((((.........))))))))).))..)))))..)))))....... ( -69.20)
>mm5.chr19/54430541-54430660
CUCCCUUCCUCCCCUCCUCCCCUGCUGGCCCCACCCCUUCCAGAAGCUUCAUGGGGGGAGGGGUUGGGGGGCAGGGGCAUCAAGAACCCCUGGGGUGGAGGGGGGCAGGGGAAUUAUU
.((((((.(((((((((.((((.(((..(((((((((((((...(......)...)))))))).))))))))(((((.........))))))))).))))))))).))))))...... ( -73.90)
>rn3.chr1/58710882-58711000
CUCCCUUCCUCCCCUCCUCCCCUGCUGGCCCCACCCCUUCAAGAAGCUUCAUGGGGGGGGGGUUUGGGGGGCAGGGGCAUCAAGAACCCCUGGGGUGGAGGGGGCAGGGGAAUUAUUU
.((((((.(.(((((((.(((((.(..(.(((.((((((((.((....)).))))))))))).)..).)).((((((.........))))))))).)))))))).))))))....... ( -66.90)
>canFam1.chr18/3341154-3341272
CCCCCCCCUGCCCUCCUCCCCCGCCGGCCCCACCCCUUCCAGAAGCUGCACAGGGAGGGGGGUUGGGGGGCAGGGGCAUCACGAACCCCUGGGGUGGAGGGGGACGGGGGAAAUACU
....((((((.((((((((((((((..(((((((((((((.............))))))))..))))))))(((((.........))))).))).)))))))).))))))....... ( -70.32)
>consensus
CCCCCUCCCUCCCCUCCUCCCCCGCCGGCCCCACCCCUUCCAGAAGCUGCAUGGGGGGGGGGGUUGGGGGGCAGGGGCAUCAAGAACCCCUGGGGUGGAGGGGGAC_AGGGGAAUUAUU_
.(((((...((((((((.(((((.((((((((.((((((...(......)..)))))).)))))))).)).((((((.........))))))))).))))))))...)))))........ (-61.06 = -61.12 +   0.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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