Structure #37545

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr11
Strand	-
Position	64,195,525 - 64,195,641
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	86.31
Columns	120
Mean single MFE	-57.23
Consensus MFE	-37.99
Combinations/base pair	35 / 33 = 1.06
SCI	0.66
z-score	-1.95
RNA class probability	0.699538

This structure is part of cluster 18443

Alignment

[Download Clustal]

RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  86.31
 Mean single sequence MFE: -57.23
 Consensus MFE: -37.99
 Energy contribution: -40.05
 Covariance contribution:   2.06
 Mean z-score:  -1.95
 Structure conservation index:   0.66
 SVM decision value:   0.35
 SVM RNA-class probability: 0.699538
 Prediction: RNA

######################################################################

>hg17.chr11/64195641-64195525
AUGUGUCCAGCUGCAGUGGCUGUUCUGUGUCGCACGGCCCCCUCCCUUCCCUCCUCCCCCACCGGCCCCACCCCUUCCAGAAGAUGCGUGGGGGGGAGGUUGGGGGGCAGGGGCAU
.((((.((((..((((...)))).))).).))))..(((((((((((..(((((.((((((((((.....)).(((....)))..).))))))))))))..))))))..))))).. ( -58.70)
>mm5.chr19/54430580-54430700
AUGGGUCCCAAGCUGCAGUGGCUGUUCUGUGUGGCAUGCUCUCCCUUCCUCCCCUCCUCCCCUGCUGGCCCCACCCCUUCCAGAAGCUUCAUGGGGGGAGGGGUUGGGGGGCAGGGGCAU
....(((((..((..((..((....))..))..)).(((((.(((.....(((((((((((.((..(((..(..........)..))).)).)))))))))))..))))))))))))).. ( -55.80)
>rn3.chr1/58710920-58711039
AUGGGUCCCAGCUGCAGUGGCUGUUCUGUGUGGCAUGCUCUCCCUUCCUCCCCUCCUCCCCUGCUGGCCCCACCCCUUCAAGAAGCUUCAUGGGGGGGGGGUUUGGGGGGCAGGGGCAU
..(((....((((((.(..(.....)..)...))).)))..))).....(((((.((((((....((((((.(((((.((.((....)).))))))))))))).)))))).)))))... ( -53.40)
>canFam1.chr18/3341193-3341308
AUGUGUCCCACCUGCAGAGGCUGUUCUGUCGCACGGCCCCCCCCUGCCCUCCUCCCCCGCCGGCCCCACCCCUUCCAGAAGCUGCACAGGGAGGGGGGUUGGGGGGCAGGGGCAU
..(((((((.........((((((.(....).))))))((((((.(((((((((((....((((..(..........)..))))....))))))))))).))))))..))))))) ( -61.00)
>consensus
AUGGGUCCC_AGCUGCAGUGGCUGUUCUGUGUCGCACG_GCCCCCUCCCUCCCCUCCUCCCCCGCCGGCCCCACCCCUUCCAGAAGCUGCAUGGGGGGGGGGGUUGGGGGGCAGGGGCAU
....(((((..((.((((........))))...)).......(((.(((..(((((((((((...((((..(..........)..))))...)))))))))))..))))))..))))).. (-37.99 = -40.05 +   2.06)

[Download RNAz result]

Consensus structure

Secondary structure graph

Secondary structure

[PS | PDF]

Montain plot

Secondary structure

[PS | PDF]

Dotplot

Secondary structure

[PS | PDF]