Structure #44294
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | - |
| Position | 3,231,826 - 3,231,940 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 72.1 |
| Columns | 120 |
| Mean single MFE | -49.87 |
| Consensus MFE | -32.3 |
| Combinations/base pair | 28 / 26 = 1.08 |
| SCI | 0.65 |
| z-score | -2.18 |
| RNA class probability | 0.995861 |
This structure is part of cluster 22010
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 72.10 Mean single sequence MFE: -49.87 Consensus MFE: -32.30 Energy contribution: -33.80 Covariance contribution: 1.50 Mean z-score: -2.18 Structure conservation index: 0.65 SVM decision value: 2.62 SVM RNA-class probability: 0.995861 Prediction: RNA ###################################################################### >hg17.chr12/3231940-3231826 GGGAGUGCAGGGACGGCUAUAUAAGGGCAUGGGGCUGGGGGGAGCCCAGGGGCUGGGAUUUCUCCCUGGCCCCGGAGAGAGCACCCGCUCACACAGGCCUGUGCACACACCUGC ......(((((....((.......((((.((((((..((((((.(((((...)))))...))))))..))))))....((((....))))......))))..)).....))))) ( -56.30) >mm5.chr6/21081716-21081820 GGGCAGCUAUAUAAGGACAGCCAUAUAAGGGCAUGGGACUAGGGGGGAGCCCAGGGGGCUGGGGUUUCUCCUGGCCCCAGCAGAAGCUCACAGUGUGCACCUGC ((((..((.((((.((....)).)))).))((.((((.(((((((..(.(((((....))))).)..))))))).))))))....)))).(((.(....)))). ( -45.30) >rn3.chr4/22680880-22680984 GGGCAGCUAUAUAAGGACAACCAUAUAAGGGCAUGGGACUAAGGGGGAGCCCAGGGGGCUGGGGUUUCUCCUGGCCCCAGUAGGAACCCACAGAGUGCACCUGC ((((((((.((((.((....)).))))..))).((((.(((.(((....)))..(((((..(((....)))..)))))..)))...)))).....))).))... ( -42.30) >canFam1.chr27/4537640-4537755 GAGAGCAUGGGGACAGCUAUACAAGGGCAUGGGGCUGGGGGGAGCCCAGGGGGCUGGGAUUUCUGCCCGGCCCCGGCAAGAGCUCACACGCACGCAGGCAUGUGCACACACCUGC ..((((.((....))...........((.((((((((((.(((.(((((....)))))...))).))))))))))))....))))........(((((..((....))..))))) ( -55.60) >consensus GGGAA____UAUAAGGACAGCCAUAUAAGGGCAUGGGACU_GGGGGGAGCCCAGGGGGCUGGGAUUUCUCC_UGGCCCC______AGCACAAACUCACA_________GCACACACCUGC .............(((...(((.......)))..((((((((((((((((((((....))))).)))))))))))))))....................................))).. (-32.30 = -33.80 + 1.50)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
