Structure #44295
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr12 |
Strand | + |
Position | 3,231,866 - 3,231,974 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 78.5 |
Columns | 120 |
Mean single MFE | -49.9 |
Consensus MFE | -35.38 |
Combinations/base pair | 40 / 28 = 1.43 |
SCI | 0.71 |
z-score | -3.62 |
RNA class probability | 0.999875 |
This structure is part of cluster 22010
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 78.50 Mean single sequence MFE: -49.90 Consensus MFE: -35.38 Energy contribution: -33.57 Covariance contribution: -1.81 Mean z-score: -3.62 Structure conservation index: 0.71 SVM decision value: 4.34 SVM RNA-class probability: 0.999875 Prediction: RNA ###################################################################### >hg17.chr12/3231866-3231974 CGGGGCCAGGGAGAAAUCCCAGCCCCUGGGCUCCCCCCAGCCCCAUGCCCUUAUAUAGCCGUCCCUGCACUCCCAGAGCUCCGGGGGUGGGGACGGAGCCCCCUCCUA .(((((..((((....)))).))))).((((((((((((.((((..((.((......((.......))......)).))...)))).)))))..)))))))....... ( -56.40) >mm5.chr6/21081852-21081741 GGGGCCAGGAGAAACCCCAGCCCCCUGGGCUCCCCCCUAGUCCCAUGCCCUUAUAUGGCUGUCCUUAUAUAGCUGCCCUGCACUCCAGGACAGGGACAGAGCCCCUCCUA ((((((.((((....(((((....)))))))))......(((((..(((.......)))((((((......((......)).....))))))))))).).)))))..... ( -44.30) >rn3.chr4/22681016-22680905 GGGGCCAGGAGAAACCCCAGCCCCCUGGGCUCCCCCUUAGUCCCAUGCCCUUAUAUGGUUGUCCUUAUAUAGCUGCCCUGCACUCCAGGACAGGGACAGAGCCCCUCCUA ((((((.((((....(((((....)))))))))......(((((....((......)).((((((......((......)).....))))))))))).).)))))..... ( -42.40) >canFam1.chr27/4537795-4537680 CGGGGCCGGGCAGAAAUCCCAGCCCCCUGGGCUCCCCCCAGCCCCAUGCCCUUGUAUAGCUGUCCCCAUGCUCUCAGAGCUCCGGGGGUGGGGACGGAGCCCCCCCCCUCCACUA .(((((.(((.(....)))).)))))..((((((((((((.((((((((....))))............((((...))))...)))).)))))..)))))))............. ( -56.50) >consensus _GGGGCCA_GGAGAAACCCCAGCCCCCUGGGCUCCCCCC_AGCCCCAUGCCCUUAUAUAGCUGUCCCUAUA____CGCCCAGAACUCC_AGGACAGGGACAGAG_CCCCUC______CUA .(((((..(((((....(((((....)))))))))).....)))))..............((((((((((.....(((...)))........)))))))))).................. (-35.38 = -33.57 + -1.81)