Structure #44298
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | + |
| Position | 3,231,904 - 3,231,980 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 75.41 |
| Columns | 86 |
| Mean single MFE | -24.57 |
| Consensus MFE | -16.18 |
| Combinations/base pair | 29 / 18 = 1.61 |
| SCI | 0.66 |
| z-score | -1.54 |
| RNA class probability | 0.581266 |
This structure is part of cluster 22010
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 86 Columns: 86 Strand: + Mean pairwise identity: 75.41 Mean single sequence MFE: -24.58 Consensus MFE: -16.18 Energy contribution: -14.37 Covariance contribution: -1.81 Mean z-score: -1.54 Structure conservation index: 0.66 SVM decision value: 0.10 SVM RNA-class probability: 0.581266 Prediction: RNA ###################################################################### >hg17.chr12/3231904-3231980 AGCCCCAUGCCCUUAUAUAGCCGUCCCUGCACUCCCAGAGCUCCGGGGGUGGGGACGGAGCCCCCUCCUACUGUAC ...............(((((..(((((..(((((((.(....).))))))))))))((((....))))..))))). ( -27.80) >mm5.chr6/21081858-21081780 AGUCCCAUGCCCUUAUAUGGCUGUCCUUAUAUAGCUGCCCUGCACUCCAGGACAGGGACAGAGCCCCUCCUACUGUAC .(((((..(((.......)))((((((......((......)).....)))))))))))................... ( -21.90) >rn3.chr4/22681022-22680944 AGUCCCAUGCCCUUAUAUGGUUGUCCUUAUAUAGCUGCCCUGCACUCCAGGACAGGGACAGAGCCCCUCCUACUGUAC .(((((....((......)).((((((......((......)).....)))))))))))................... ( -20.00) >canFam1.chr27/4537801-4537719 AGCCCCAUGCCCUUGUAUAGCUGUCCCCAUGCUCUCAGAGCUCCGGGGGUGGGGACGGAGCCCCCCCCCUCCACUACUGUAC ..............((((((..((......((((...))))...(((((.((((......)))))))))...))..)))))) ( -28.60) >consensus AGCCCCAUGCCCUUAUAUAGCUGUCCCUAUA____CGCCCAGAACUCC_AGGACAGGGACAGAG_CCCCUC______CUACUGUAC ....(((((......)))))((((((((((.....(((...)))........))))))))))........................ (-16.18 = -14.37 + -1.81)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
