Structure #46544
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | - |
| Position | 42,739,808 - 42,739,925 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 74.7 |
| Columns | 120 |
| Mean single MFE | -30.58 |
| Consensus MFE | -21.4 |
| Combinations/base pair | 38 / 27 = 1.41 |
| SCI | 0.7 |
| z-score | -1.62 |
| RNA class probability | 0.906961 |
This structure is part of cluster 23269
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 74.70 Mean single sequence MFE: -30.58 Consensus MFE: -21.40 Energy contribution: -21.08 Covariance contribution: -0.32 Mean z-score: -1.62 Structure conservation index: 0.70 SVM decision value: 1.05 SVM RNA-class probability: 0.906961 Prediction: RNA ###################################################################### >hg17.chr12/42739925-42739808 ACAACAAUCCUCAUGGACAAUUUACAGUGACAUGCCCAUAGGCAUGUCAAAAAGAAAUACAUACAAAUGUCAUAGUUAAAUACUUGGUGGCAAUUUAUUCUGCUUUUUCUGCUGCUG .......(((....))).......((((((((((((....))))))))....(((((..((...((((((((((((.....)))..))))).))))....))...)))))))))... ( -26.40) >mm5.chr15/95228163-95228046 ACUGCGAUCCUCAAGGACAAUUUACAGUGACAUGCCCAUAGGCGUGUCAGGAAGAAACGCACGUGAGUGUCAGAAUCAAACACUUGGUGGCAAUUUACUCUGCCGCUUCUGUUGCUG ((((..((((....)))....)..))))((((((((....))))))))..........((((....))))(((.....((((...(((((((........)))))))..)))).))) ( -38.00) >rn3.chr7/133410789-133410672 ACUGAGAUCCUCAAGGACAAUUUACUGUGACAUGCCCGUGGGCGUGUCAGGAGAAACACACAUUAAGUGUCGGAGUCAAACACUUGGUGGCAAUUUACUCUGCCGCUUCUGUUGCUA .((((..((((.....(((......)))((((((((....))))))))))))......(((.....)))))))(((..((((...(((((((........)))))))..))))))). ( -36.90) >canFam1.chr27/36014327-36014444 ACUACGAUCCUCAUGGACAAUUUACAGUGACAUGCCCAUAGGCAUGUCAAGAAGAAAUACAUAUAAAUGUCAUAGUCAAAUACUUGGUGGCAAUUUAUUCUGCUUUUUGUGUUGCUG .....(.(((....))))......((((((((((((....))))))))((((((........((((((((((((((.....)))..))))).))))))....)))))).....)))) ( -27.90) >galGal2.chr1/27084761-27084645 AGUCAUCUUCACAGAACAUUUACAUUGGCAUGUAUACAAGCAUGUCAAAAAUCAACAUAUACGUAUACGUCGCAAUCAAAUGACUUCUGGCAGUUUUUGAGGCUGUACUGCUGCUG (((((.(((((.(((((.......(((((((((......)))))))))....................((((.((((....)).)).)))).)))))))))).)).)))....... ( -23.70) >consensus ACUGCGAUCCUCAAGGACAAUUUACAGUGACAUGCCCAUAGGCAUGUCAAGAA__GAAAUACACAU_AAAUGUCAGAGUCAAAUACUUGGUGGCAAUUUAUUCUGCUGCUUCUGUUGCUG .......(((....)))..........(((((((((....)))))))))...........((((.....))))........((((...(((((((........)))))))..)))).... (-21.40 = -21.08 + -0.32)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
