Structure #46546
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | - |
| Position | 42,739,848 - 42,739,941 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 74.84 |
| Columns | 96 |
| Mean single MFE | -25.79 |
| Consensus MFE | -18.78 |
| Combinations/base pair | 27 / 19 = 1.42 |
| SCI | 0.73 |
| z-score | -3.02 |
| RNA class probability | 0.999488 |
This structure is part of cluster 23269
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 96 Columns: 96 Strand: + Mean pairwise identity: 74.84 Mean single sequence MFE: -25.79 Consensus MFE: -18.78 Energy contribution: -17.26 Covariance contribution: -1.52 Mean z-score: -3.02 Structure conservation index: 0.73 SVM decision value: 3.65 SVM RNA-class probability: 0.999488 Prediction: RNA ###################################################################### >hg17.chr12/42739941-42739848 AGUCCAUAAAGCUGUCACAACAAUCCUCAUGGACAAUUUACAGUGACAUGCCCAUAGGCAUGUCAAAAAGAAAUACAUACAAAUGUCAUAGUU .........((((((.(((....(((....)))..((((....(((((((((....))))))))).....)))).........))).)))))) ( -23.80) >mm5.chr15/95228179-95228086 AGUCCAUAAAGCUGUCACUGCGAUCCUCAAGGACAAUUUACAGUGACAUGCCCAUAGGCGUGUCAGGAAGAAACGCACGUGAGUGUCAGAAUC ..(((.....(((((........(((....)))......)))))((((((((....)))))))).)))......((((....))))....... ( -29.04) >rn3.chr7/133410805-133410712 AGUCCAUAAAGCCGUCACUGAGAUCCUCAAGGACAAUUUACUGUGACAUGCCCGUGGGCGUGUCAGGAGAAACACACAUUAAGUGUCGGAGUC ..(((......(((((..((((...))))..))).........(((((((((....)))))))))))......((((.....)))).)))... ( -30.50) >canFam1.chr27/36014367-36014460 AGUCCAUAAAGCUGUCACUACGAUCCUCAUGGACAAUUUACAGUGACAUGCCCAUAGGCAUGUCAAGAAGAAAUACAUAUAAAUGUCAUAGUC .((((((..((..(((.....))).)).)))))).((((....(((((((((....))))))))).....))))((((....))))....... ( -23.50) >galGal2.chr1/27084777-27084684 AGCGCGUAACAGUGUCAGUCAUCUUCACAGAACAUUUACAUUGGCAUGUAUACAAGCAUGUCAAAAAUCAACAUAUACGUAUACGUCGCAAUC .(((((((((.(((..((....)).)))............(((((((((......)))))))))..............)).)))).))).... ( -22.10) >consensus AGUCCAUAAAGCUGUCACUGCGAUCCUCAAGGACAAUUUACAGUGACAUGCCCAUAGGCAUGUCAAGAA__GAAAUACACAU_AAAUGUCAGAGUC ....(((...(((((........(((....)))......)))))((((((((....)))))))).....................)))........ (-18.78 = -17.26 + -1.52)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
