Structure #48186

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr12
Strand	+
Position	53,362,785 - 53,362,902
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.37
Columns	120
Mean single MFE	-44.68
Consensus MFE	-33.01
Combinations/base pair	45 / 32 = 1.41
SCI	0.74
z-score	-3.22
RNA class probability	0.998609

This structure is part of cluster 24036

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.37
 Mean single sequence MFE: -44.68
 Consensus MFE: -33.01
 Energy contribution: -32.58
 Covariance contribution:  -0.44
 Mean z-score:  -3.22
 Structure conservation index:   0.74
 SVM decision value:   3.16
 SVM RNA-class probability: 0.998609
 Prediction: RNA

######################################################################

>hg17.chr12/53362785-53362902
GUGAGCUGGGGUUGGGGAAAAAAGAAUUGCCCAGUGGGGUAUGAAGGACACAAGAGUUCCUAUUCCCUGCUGAGAUUCCAGGAACUCAGGAGGUCAUUGUGUCCUGAAAUGUCCUAA
....((((((...................))))))(((..((..(((((((((((((....))))(((.(((((.((....)).))))).)))...)))))))))...))..))).. ( -41.81)
>mm5.chrUn_random/17694852-17694735
GUAAGUAAAGAGUUAGGGAAAAGAGAGCUGCCCAGUGGGGUGUGAAGGACACAGGGCUCCUGUUCCCUGGUGAAAUUCCAGGAACCGCAGGAAGCCCUUGUGUUCUGAAAUGUUCCA
...............(((...((....)).)))..(((..(((..((((((((((((((((((..(((((.......)))))....))))).))))).))))))))...)))..))) ( -48.10)
>rn3.chr7/142634171-142634288
GUAAGUAAAGGGUUAGGGAAAAGAGAACUGCCCAGUGGGGUGUGAAGGACACAGGGCUCCUGUUCCCUGCUGAAAUUCCAGGAACUACAGGAGGCCCUUGUGUUCUGAAAUGUUCCA
.........((((.((...........))))))..(((..(((..((((((((((((((((((..((((.........))))....)))))).)))).))))))))...)))..))) ( -44.90)
>canFam1.chr27/45401124-45401005
GUGCAGAGGCCUUGGGGGAAAAAGAAGCUGCCCAGUGGGGUGUGAAGGACACUAGGGUUUGUGUUCUCUGCUGAGAUUCCAGGAACCUUGGGAGGCCUUUGUAUCCUGAAAUGUCCCAA
(((((((((((((.............((.((((....))))))........(((((((((.((.((((....))))...)).))))))))))))))))))))))............... ( -43.90)
>consensus
GUAAGU_AAGGGUUAGGGAAAAAAGAA_CUGCCCAGUGGGGUGUGAAGGACAC_AGGGCUCCUGUUCCCUGCUGAAAUUCCAGGAACC_CAGGAGGCCCUUGUGUCCUGAAAUGUCCC_A
...............(((...((.....)).)))...(((..((..(((((((.(((((((((((..((((.........))))....)))))).))))).)))))))...))..))).. (-33.01 = -32.58 +  -0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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