Structure #48192
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | + |
| Position | 53,362,823 - 53,362,937 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 79.94 |
| Columns | 120 |
| Mean single MFE | -39.05 |
| Consensus MFE | -25.75 |
| Combinations/base pair | 44 / 32 = 1.38 |
| SCI | 0.66 |
| z-score | -1.72 |
| RNA class probability | 0.637992 |
This structure is part of cluster 24036
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.94 Mean single sequence MFE: -39.05 Consensus MFE: -25.75 Energy contribution: -25.75 Covariance contribution: 0.00 Mean z-score: -1.72 Structure conservation index: 0.66 SVM decision value: 0.21 SVM RNA-class probability: 0.637992 Prediction: RNA ###################################################################### >hg17.chr12/53362823-53362937 GUAUGAAGGACACAAGAGUUCCUAUUCCCUGCUGAGAUUCCAGGAACUCAGGAGGUCAUUGUGUCCUGAAAUGUCCUAAAUGGCCACAAUCCCUGCUGGGUUCCCUCUGGUUUU .(((..(((((((((((((....))))(((.(((((.((....)).))))).)))...)))))))))...)))........(((((....(((....))).......))))).. ( -34.20) >mm5.chrUn_random/17694889-17694774 GUGUGAAGGACACAGGGCUCCUGUUCCCUGGUGAAAUUCCAGGAACCGCAGGAAGCCCUUGUGUUCUGAAAUGUUCCAAUGGGCACAACCCCUUGGCCUGGUUGCAUCUGGUUUU (((..(((((((((((((((((((..(((((.......)))))....))))).))))).))))))))........((((.(((.....))).)))).....)..)))........ ( -46.40) >rn3.chr7/142634210-142634325 GUGUGAAGGACACAGGGCUCCUGUUCCCUGCUGAAAUUCCAGGAACUACAGGAGGCCCUUGUGUUCUGAAAUGUUCCAAUGGGCACCCUACCCCCACCUGGUUGCAUCUGGUUCU ......((((((((((((((((((..((((.........))))....)))))).)))).))))))))...((((.(((.((((.........))))..)))..))))........ ( -40.30) >canFam1.chr27/45401157-45401044 GUGUGAAGGACACUAGGGUUUGUGUUCUCUGCUGAGAUUCCAGGAACCUUGGGAGGCCUUUGUAUCCUGAAAUGUCCCAAACGGGCCACAAACGCUUGGUUCCCUCUGGUUUU ....((.(((.(((((((((((((.((((....))))...(((((..(..(((...)))..)..)))))....((((.....))))))))))).))))))))).))....... ( -35.30) >consensus GUGUGAAGGACAC_AGGGCUCCUGUUCCCUGCUGAAAUUCCAGGAACC_CAGGAGGCCCUUGUGUCCUGAAAUGUCCC_AAU_GGCCACA__ACCCCU__GCCUGGUUCCAUCUGGUUUU ......(((((((.(((((((((((..((((.........))))....)))))).))))).)))))))....(((((......)))))............(((.((.....)).)))... (-25.75 = -25.75 + 0.00)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
