Structure #49263
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | - |
| Position | 66,338,987 - 66,339,105 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 82.83 |
| Columns | 120 |
| Mean single MFE | -30.9 |
| Consensus MFE | -16.77 |
| Combinations/base pair | 33 / 29 = 1.14 |
| SCI | 0.54 |
| z-score | -2.09 |
| RNA class probability | 0.544957 |
This structure is part of cluster 24582
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 82.83 Mean single sequence MFE: -30.90 Consensus MFE: -16.77 Energy contribution: -18.57 Covariance contribution: 1.80 Mean z-score: -2.09 Structure conservation index: 0.54 SVM decision value: 0.02 SVM RNA-class probability: 0.544957 Prediction: RNA ###################################################################### >hg17.chr12/66339105-66338987 AAAACAUAGUGAAUGUCUUUGACACCAAUCUGUAAAUGCGUGGCAGUCAUGAAGUAAUCAGUGGCCUGCCACUGAUGUUAUUAUUCUGCCACACUAAAUACAGUAAGGCUCAUUGUAC .....(((((((.((((...))))((...(((((...(.(((((((..((((....((((((((....))))))))....)))).))))))).)....)))))...)).))))))).. ( -40.40) >canFam1.chr10/13065588-13065471 AAAACAGUGAAUGUCUUUGACACCAAUCUGUAAAUGCGCAGCAGUCAUGAAGUAAUCAAUGGCCUGCCACUGAUGUUUAUUACUCUGCCACACUAGAUACAGUAAGGCUCAUCAUAC ......((((..(((((........(((((....((.((((.(((.(((((...((((.(((....))).)))).))))).)))))))))...))))).....)))))...)))).. ( -26.42) >mm5.chr10/12083227-12083342 AAAACAGAGUGAAUGUGUUUGACCAAUCUGUAAAUGUGUGACAGUCAUGAAGAAUCAAUGGCCUGCCACCAAUGUGAUUUCUCUGCCACACUAAAUACAGUAAGGCUCAUCGUAC .(((((.(.....).)))))((((...(((((...(((((.(((....((((...((.(((.......))).))...)))).))).)))))....)))))...)).))....... ( -25.40) >rn3.chr7/84944340-84944455 AAAACAGAGUGAAUGAGUUUGACCAAUCUGUAAAUGUGUGGCAGUCAUGAAGAAUCAAUGGCCUGCCACCGAUGUGAUUACUCUGCCACACUAAAUACAGUAAGGCUCAUCGUAU ..........((.(((((((.......(((((...(((((((((.........(((..(((....)))..))).........)))))))))....)))))..))))))))).... ( -33.87) >galGal2.chr1/31820913-31820794 GAAGAGAAAGGUAAUACCUUUGACACCACGCUGCAAUGCAUGACAGUCACGUUGUAACCAGUGGCCAGCCACUGAUGUUUAUUACUGUGUCACACUAGUUACAGUAAGGCUAUUUGUAC ......(((((.....))))).(((....(((((((((..((.....))))))))...((((((....)))))).......((((((((.(......).)))))))))))....))).. ( -28.40) >consensus AAA_ACAGAGUGAAUGUCUUUGACACCAAUCUGUAAAUGCGUGGCAGUCAUGAAGUAAUCAAUGGCCUGCCACUGAUGUU_AUUACUCUGCCACACUAAAUACAGUAAGGCUCAUCGUAC .........((((..(((((..........(((((...(.(((((((..........((((.(((....))).))))..........))))))).)....))))).)))))))))..... (-16.77 = -18.57 + 1.80)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
