Structure #49264

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr12
Strand	+
Position	66,339,026 - 66,339,112
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	81.42
Columns	87
Mean single MFE	-22.6
Consensus MFE	-12.56
Combinations/base pair	26 / 19 = 1.37
SCI	0.56
z-score	-2.09
RNA class probability	0.699891

This structure is part of cluster 24582

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 87
 Columns: 87
 Strand: +
 Mean pairwise identity:  81.42
 Mean single sequence MFE: -22.60
 Consensus MFE: -12.56
 Energy contribution: -11.60
 Covariance contribution:  -0.96
 Mean z-score:  -2.09
 Structure conservation index:   0.56
 SVM decision value:   0.35
 SVM RNA-class probability: 0.699891
 Prediction: RNA

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>hg17.chr12/66339026-66339112
AACAUCAGUGGCAGGCCACUGAUUACUUCAUGACUGCCACGCAUUUACAGAUUGGUGUCAAAGACAUUCACUAUGUUUUUAUGGUU
...((((((((....))))))))....(((((((.((((..(.......)..)))))))((((((((.....)))))))))))).. ( -23.60)
>canFam1.chr10/13065511-13065595
AACAUCAGUGGCAGGCCAUUGAUUACUUCAUGACUGCUGCGCAUUUACAGAUUGGUGUCAAAGACAUUCACUGUUUUUAUGGUU
.......(..((((..(((.((.....))))).))))..).(((..((((...((((((...))))))..))))....)))... ( -20.70)
>mm5.chr10/12083349-12083266
CACAUUGGUGGCAGGCCAUUGAUUCUUCAUGACUGUCACACAUUUACAGAUUGGUCAAACACAUUCACUCUGUUUUCGUGGUU
(((..(((((((((..(((.((....))))).))))))).))...(((((.(((..........))).)))))....)))... ( -21.30)
>rn3.chr7/84944462-84944379
CACAUCGGUGGCAGGCCAUUGAUUCUUCAUGACUGCCACACAUUUACAGAUUGGUCAAACUCAUUCACUCUGUUUUCAUGGUU
.......(((((((..(((.((....))))).))))))).(((..(((((.(((..........))).)))))....)))... ( -22.30)
>galGal2.chr1/31820834-31820920
AACAUCAGUGGCUGGCCACUGGUUACAACGUGACUGUCAUGCAUUGCAGCGUGGUGUCAAAGGUAUUACCUUUCUCUUCCAUGGUU
...((((((((....)))))))).....((((..(..(((((......)))))..)..(((((.....)))))......))))... ( -25.10)
>consensus
AACAUCAGUGGCAGGCCAUUGAUUACUUCAUGACUGCCACGCAUUUACAGAUUGGUGUCAAAGACAUUCACUCUGU_UUUCAUGGUU
...((((((((....)))))))).....((((((((...........))).(((....)))..................)))))... (-12.56 = -11.60 +  -0.96)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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