Structure #50828
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | + |
| Position | 97,495,881 - 97,495,998 |
| Number of sequences | 6 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish |
| Mean pairwise identity | 73.38 |
| Columns | 120 |
| Mean single MFE | -35.75 |
| Consensus MFE | -16.07 |
| Combinations/base pair | 44 / 30 = 1.47 |
| SCI | 0.45 |
| z-score | -3.45 |
| RNA class probability | 0.999071 |
This structure is part of cluster 25547
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 73.38 Mean single sequence MFE: -35.75 Consensus MFE: -16.07 Energy contribution: -16.25 Covariance contribution: 0.18 Mean z-score: -3.45 Structure conservation index: 0.45 SVM decision value: 3.36 SVM RNA-class probability: 0.999071 Prediction: RNA ###################################################################### >hg17.chr12/97495881-97495998 ACAUGCUUCCUUAGAUCCACCUUUGUGGAUGAAUCUUGAACUGAGUUCCACUUGUAAACUUCUUGUUUCUUGUGGUUCCAGUAGUCAAAGAAACAUCCAGCAACUUUUUUGGUUGUA .........................((((((..((((((((((.(..((((..(.((((.....)))))..))))..)))))..)).))))..))))))((((((.....)))))). ( -30.60) >canFam1.chr15/41003939-41004054 ACAUGCUUCCUUAGAUCCACCUUUGUGGAUGCUAGUCUUGAACUGAGUUCUACUUGUAAACAUUUGGUUUCUUGUAGUUCCAGUCAGGAAACAUCCAGCAACUUUUUUGGUUGUA ..(((.((((((((((((((....)))))).))))...(((.(((.(..((((..(.((((.....)))))..))))..))))))))))).)))...((((((.....)))))). ( -32.00) >mm5.chr10/39744909-39744795 ACAUGCUUCCUUAGAUCCACCUUUGUGGAUGGGUCUUGGACUGAGUUCUACCUGUAAACUUCUUGUUUCUUGUGGUUCCAGUCCAAGAAACGUCCAGCAACUUUGUUGGUUGUA .........................((((((..((((((((((.(..((((..(.((((.....)))))..))))..)))))))))))..))))))((((((.....)))))). ( -41.10) >rn3.chr7/115006491-115006377 ACAUGCUUCCUUAGAUCCACCUUUGUGGAUGAAUCUUGAACUGAGUUCUACCUGUAAACUUCUUGUUUCUUGUAGUUCCAGUCCAGGAAACAUCCAGCAACUUUGUUGGUUGUA ..............((((((....))))))...(((((.((((.(..((((..(.((((.....)))))..))))..))))).))))).(((.((((((....)))))).))). ( -33.20) >galGal2.chr1/0-109 ACAUGCUCCUUAGAUCCAUCUUUGUGAGUAUCUUUGUGCUGAGUUCUGCUGGAUAACUUCAGUUUCUAGCAGUUCCAGUCAAAGUUGCUCGGCAACUUUUUUGGUUGUA ........................((((((.(((((.((((.(..((((((((.(((....)))))))))))..)))))))))).))))))((((((.....)))))). ( -36.40) >danRer1.chr25/16347488-16347381 ACACGUUCCUUAGAUCCGCCUCUGGGGAGCGUCAGUGCUCUUCUUCUGCUGCUCUCAGUCUGAGAGCGUCAGGGUCGACCGCAGCUCCCGCCAGCUUUACUGCUGUA ..((((((((((((......))))))))))))..(((.((..((.(((.(((((((.....))))))).)))))..)).))).((....))((((......)))).. ( -41.20) >consensus ACAUGCUUCCUUAGAUCCACCUUUGUGGAUG__AAUCUUGAACUGAGUUCUACUUGUAAACUUCUUGUUUCUUGUAGUUCCAGU___CAAAGAAACAUC_CAGCAACUUUUUUGGUUGUA ..............((((((....)))))).....((((..((((.(..((((..(.((((.....)))))..))))..))))).....)))).........((((((.....)))))). (-16.07 = -16.25 + 0.18)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
