Structure #50832
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | - |
| Position | 97,495,881 - 97,495,998 |
| Number of sequences | 6 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish |
| Mean pairwise identity | 73.38 |
| Columns | 120 |
| Mean single MFE | -31.9 |
| Consensus MFE | -13.4 |
| Combinations/base pair | 38 / 29 = 1.31 |
| SCI | 0.42 |
| z-score | -2.68 |
| RNA class probability | 0.990876 |
This structure is part of cluster 25547
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 73.38 Mean single sequence MFE: -31.90 Consensus MFE: -13.40 Energy contribution: -15.07 Covariance contribution: 1.67 Mean z-score: -2.68 Structure conservation index: 0.42 SVM decision value: 2.24 SVM RNA-class probability: 0.990876 Prediction: RNA ###################################################################### >hg17.chr12/97495998-97495881 UACAACCAAAAAAGUUGCUGGAUGUUUCUUUGACUACUGGAACCACAAGAAACAAGAAGUUUACAAGUGGAACUCAGUUCAAGAUUCAUCCACAAAGGUGGAUCUAAGGAAGCAUGU ..((((.......))))....((((((((((((..(((((..((((...((((.....))))....))))...))))))).(((((((((......))))))))))))))))))).. ( -30.70) >canFam1.chr15/41004054-41003939 UACAACCAAAAAAGUUGCUGGAUGUUUCCUGACUGGAACUACAAGAAACCAAAUGUUUACAAGUAGAACUCAGUUCAAGACUAGCAUCCACAAAGGUGGAUCUAAGGAAGCAUGU ..((((.......))))....(((((((((((((((..((((...((((.....))))....))))...))))))......(((.((((((....)))))))))))))))))).. ( -30.50) >mm5.chr10/39744795-39744909 UACAACCAACAAAGUUGCUGGACGUUUCUUGGACUGGAACCACAAGAAACAAGAAGUUUACAGGUAGAACUCAGUCCAAGACCCAUCCACAAAGGUGGAUCUAAGGAAGCAUGU ...............((((...((..(((((((((((.(((.....((((.....))))...))).....)))))))))))..)((((((....))))))....)..))))... ( -30.80) >rn3.chr7/115006377-115006491 UACAACCAACAAAGUUGCUGGAUGUUUCCUGGACUGGAACUACAAGAAACAAGAAGUUUACAGGUAGAACUCAGUUCAAGAUUCAUCCACAAAGGUGGAUCUAAGGAAGCAUGU .....(((.((....)).)))((((((((((((((((..((((...((((.....))))....))))...))))))).(((((((((......))))))))).))))))))).. ( -37.40) >galGal2.chr1/109-0 UACAACCAAAAAAGUUGCCGAGCAACUUUGACUGGAACUGCUAGAAACUGAAGUUAUCCAGCAGAACUCAGCACAAAGAUACUCACAAAGAUGGAUCUAAGGAGCAUGU .....(((..((((((((...))))))))...)))..(((((.(((((....))).)).)))))......((.(..((((..((.....))...))))...).)).... ( -24.40) >danRer1.chr25/16347381-16347488 UACAGCAGUAAAGCUGGCGGGAGCUGCGGUCGACCCUGACGCUCUCAGACUGAGAGCAGCAGAAGAAGAGCACUGACGCUCCCCAGAGGCGGAUCUAAGGAACGUGU ..((((......))))..(((..((((.((((....))))((((((.....)))))).)))).....((((......)))))))....(((..((....)).))).. ( -37.60) >consensus UACAACCAAAAAAGUUGCUG_GAUGUUUCUUGG___ACUGGAACUACAAGAAACAAGAAGUUUACAAGUAGAACUCAGUUCAAGAAU__CAUCCACAAAGGUGGAUCUAAGGAAGCAUGU ..((((.......)))).......(((((((......((((..((((...((((.....))))....))))...))))............((((((....))))))...))))))).... (-13.40 = -15.07 + 1.67)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
