Structure #50842

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr12
Strand	-
Position	97,496,038 - 97,496,127
Number of sequences	6
Organisms	human, dog, mouse, rat, chicken, fugu
Mean pairwise identity	67.3
Columns	96
Mean single MFE	-26.25
Consensus MFE	-10.04
Combinations/base pair	24 / 16 = 1.50
SCI	0.38
z-score	-2.01
RNA class probability	0.899476

This structure is part of cluster 25547

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 6
 Slice: 1 to 96
 Columns: 96
 Strand: +
 Mean pairwise identity:  67.30
 Mean single sequence MFE: -26.25
 Consensus MFE: -10.04
 Energy contribution:  -9.36
 Covariance contribution:  -0.69
 Mean z-score:  -2.01
 Structure conservation index:   0.38
 SVM decision value:   1.01
 SVM RNA-class probability: 0.899476
 Prediction: RNA

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>hg17.chr12/97496127-97496038
UGUCCGCACACGAGUCGAGUCCUGAUAGUAACAAAUGGCAGCAUAAAUGCAUGUCAUUUCUAUCAGAACGUUAGACUAACAUGCAGGUA
...(((((....((((..((.(((((((....(((((((((((....))).))))))))))))))).))....))))....))).)).. ( -29.10)
>canFam1.chr15/41004183-41004094
UGUCCGCACACCAGUCGAGUCCUGACAGCAAAAAAUGGCAGCACAAUUGCGUGUCAUUUCUAUCAGAACCUAAGACUAACAUGCAGGUA
...(((((....((((..((.((((.((....(((((((((((....))).)))))))))).)))).))....))))....))).)).. ( -22.70)
>mm5.chr10/39744949-39745038
UGUCCGCACACCAGUCGAGUCCUGACAGUAACACAUGACAGCAUCACGCAUGUCACUUCCAUCAGAACCUGAAGACUAGCAUGCAGGUA
...(((((..(.((((..((.((((..(.....).(((((((.....)).)))))......)))).)).....)))).)..))).)).. ( -17.80)
>rn3.chr7/115006531-115006620
UGUCCGCACACCAGUCGAGUCCUGACAGUAACACAUGACAGCAUAACGCGUGUCACUGCCGUCAGAACCUGAGGACUAACAUGCAGGUG
........((((.((..((((((..(((.......(((((((.....)).)))))(((....)))...))))))))).....)).)))) ( -22.20)
>galGal2.chr1/238-149
UGUCUGCAUACCAGCCAUGUCCUGAUAGCGGUAAAUGACUCUCAUAUUUACAGUCACUUUUAUCAGAACAGAAAGCUAACAUGCAGUUA
...((((((...(((..(((.(((((((.(((....((((...........))))))).))))))).)))....)))...))))))... ( -22.50)
>fr1.chrUn/203143338-203143252
UGUCCGUCUCCCAGCACCACAGCAGCGAGAGCUGCCUGUGCAGAACACAGGCUUGUCGGUGCUGCAGGAGGGCUGGAGGACAGGUG
...(((((..(((((.((.(((((.(((.((..(((((((.....))))))))).))).)))))..))...)))))..))).)).. ( -43.20)
>consensus
UGUCCGCACACCAGUCGAGUCCUGACAGCAACAAAUG_____AC_AGCAUAA_UGCAUGUCACUUCUAUCAGAACCUAA_GACUAACAUGCAGGUA
.....(((....((((..((.(((((((.....................................))))))).)).....))))....)))..... (-10.04 =  -9.36 +  -0.69) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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