Structure #52002

Summary

Genome/Assembly hg17
Chromosome/Contig chr12
Strand +
Position 117,393,044 - 117,393,102
Number of sequences 4
Organisms human, dog, mouse, rat
Mean pairwise identity 84.77
Columns 58
Mean single MFE -16.25
Consensus MFE -15.98
Combinations/base pair 31 / 22 = 1.41
SCI 0.98
z-score -3.46
RNA class probability 0.999286

This structure is part of cluster 26234

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 58
 Columns: 58
 Strand: +
 Mean pairwise identity:  84.77
 Mean single sequence MFE: -16.25
 Consensus MFE: -15.98
 Energy contribution: -15.47
 Covariance contribution:  -0.50
 Mean z-score:  -3.46
 Structure conservation index:   0.98
 SVM decision value:   3.49
 SVM RNA-class probability: 0.999286
 Prediction: RNA

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>hg17.chr12/117393044-117393102
AUCCUGUUCUUUAGCCAUUCAAUAAAUAUUUGUUUGGUGGCUAACUUGUACAGGAUUA
(((((((.(.((((((((..(((((....)))))..))))))))...).))))))).. ( -21.40)
>canFam1.chr26/0-58
AUCCUGUUCUAUAGCUGUUCAAUAAAUAUUUGUUUGGUGGCUUACUUGUGCAGGAUUA
(((((((.(...(((..(..(((((....)))))..)..))).....).))))))).. ( -15.90)
>mm5.chr5/34739833-34739775
AUCCUGCUCUUUAAUCAUCCAGUAAACAUUUGCUUGGUGGCUAACUUGUGUAGGAUUA
(((((((.(.(((..((((.(((((....))))).))))..)))...).))))))).. ( -17.70)
>rn3.chr12/40602823-40602881
AUCCUGCUCUUUAAUCAUUCAGGAAACAUUUGCUUAGUGGCUAACUUGUAUAGGAUUA
((((((..(.(((..((((.((.((....)).)).))))..)))...)..)))))).. ( -10.00)
>consensus
AUCCUGCUCUUUAACCAUUCAAUAAACAUUUGCUUGGUGGCUAACUUGUACAGGAUUA
(((((((.(.(((((((((.(((((....))))).)))))))))...).))))))).. (-15.98 = -15.47 +  -0.50) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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