Structure #52261

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr12
Strand	+
Position	120,510,915 - 120,511,035
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	84.17
Columns	120
Mean single MFE	-37.43
Consensus MFE	-25.84
Combinations/base pair	50 / 35 = 1.43
SCI	0.69
z-score	-2.3
RNA class probability	0.915927

This structure is part of cluster 26388

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.17
 Mean single sequence MFE: -37.42
 Consensus MFE: -25.84
 Energy contribution: -25.02
 Covariance contribution:  -0.81
 Mean z-score:  -2.30
 Structure conservation index:   0.69
 SVM decision value:   1.10
 SVM RNA-class probability: 0.915927
 Prediction: RNA

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>hg17.chr12/120510915-120511035
GGGUGUUUUUAUGUGAUUAGGCUGGAACUGUUCUCUGGGAAAUAAAUGCCCUCAGUCUAAAGGGCUUUUACGAGCCAGGGCAGGGGAUUAAAGGCGGCCGGGCUGUGGAGAAAUCCCAGG
((.((((((((.((......)).....((.((((((((....((((.(((((........))))).))))....)))))).)).))..)))))))).))...(((.(((....)))))). ( -36.90)
>mm5.chr5/120537752-120537872
GGGUAUUUUUAUGUGAUUAGCCUGGAAUAGUUCUCUGAGAAAUAAAUACCCUUGGUCUAAAGGGUUUUUAUGAGUCAGGACAGAGGAUUAAAGGCAGCCAGGCUCCACAGAAAUCCCAGG
(((.(((((..((((...(((((((..((((((((((.((.(((((.((((((......)))))).)))))...))....)))))))))).......))))))).))))))))))))... ( -44.60)
>rn3.chr12/12133541-12133421
GGGUAUUUUUAUGUGAUUAGCCUGGAAUAGUUCUCUGAGAAAUAAAUACCCUUAGUCCAAAGGGUUUUUAUGAGCCAGGGCAAAGGAUUAAAGGCAGCCAGGCUCCAGAGAAAUCCCAGG
....................(((((.....(((((((....(((((.((((((......)))))).)))))(((((..(((...............))).))))))))))))...))))) ( -38.66)
>canFam1.chr26/30225536-30225416
GGGCAUUUUUACAUGAUUAGGCUGGAACACUUCUCUGAGAAAUAAAUGCCUUCAGUCUAAAAAGCUUUUACAAGUCAGGACAGGGGAUUAAAGGCAAUCCAGCAGAGGAGAAAUCCCAGG
(((.((((((......((..((((((....(((.....))).....((((((.(((((.....((((....)))).........))))).)))))).))))))..)).)))))))))... ( -29.54)
>consensus
GGGUAUUUUUAUGUGAUUAGCCUGGAACAGUUCUCUGAGAAAUAAAUACCCUCAGUCUAAAGGGCUUUUACGAGCCAGGACAGAGGAUUAAAGGCAGCCAGGCUCCAGAGAAAUCCCAGG
(((.((((((.((....((((((((.....(((.....)))........((((.((((....(((((....))))).)))).))))...........)))))))))).)))))))))... (-25.84 = -25.02 +  -0.81) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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