Structure #52263
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | - |
| Position | 120,510,915 - 120,511,035 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 84.17 |
| Columns | 120 |
| Mean single MFE | -33.88 |
| Consensus MFE | -27.81 |
| Combinations/base pair | 40 / 29 = 1.38 |
| SCI | 0.82 |
| z-score | -3.42 |
| RNA class probability | 0.997995 |
This structure is part of cluster 26388
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 84.17 Mean single sequence MFE: -33.88 Consensus MFE: -27.81 Energy contribution: -24.94 Covariance contribution: -2.87 Mean z-score: -3.42 Structure conservation index: 0.82 SVM decision value: 2.98 SVM RNA-class probability: 0.997995 Prediction: RNA ###################################################################### >hg17.chr12/120511035-120510915 CCUGGGAUUUCUCCACAGCCCGGCCGCCUUUAAUCCCCUGCCCUGGCUCGUAAAAGCCCUUUAGACUGAGGGCAUUUAUUUCCCAGAGAACAGUUCCAGCCUAAUCACAUAAAAACACCC .((((((((((((...((((.(((...............)))..)))).(((((.((((((......)))))).)))))......)))))..)))))))..................... ( -31.96) >mm5.chr5/120537872-120537752 CCUGGGAUUUCUGUGGAGCCUGGCUGCCUUUAAUCCUCUGUCCUGACUCAUAAAAACCCUUUAGACCAAGGGUAUUUAUUUCUCAGAGAACUAUUCCAGGCUAAUCACAUAAAAAUACCC ...(((((((.((((.(((((((............(((((....((...(((((.((((((......)))))).))))).)).))))).......))))))).....)))).)))).))) ( -33.11) >rn3.chr12/12133421-12133541 CCUGGGAUUUCUCUGGAGCCUGGCUGCCUUUAAUCCUUUGCCCUGGCUCAUAAAAACCCUUUGGACUAAGGGUAUUUAUUUCUCAGAGAACUAUUCCAGGCUAAUCACAUAAAAAUACCC ((((((((((((((((((((.(((...............)))..)))))(((((.((((((......)))))).)))))....)))))))..)))))))).................... ( -43.06) >canFam1.chr26/30225416-30225536 CCUGGGAUUUCUCCUCUGCUGGAUUGCCUUUAAUCCCCUGUCCUGACUUGUAAAAGCUUUUUAGACUGAAGGCAUUUAUUUCUCAGAGAAGUGUUCCAGCCUAAUCAUGUAAAAAUGCCC .(((((((..((.(((((..((((((....))))))........((...(((((.((((((......)))))).))))).)).))))).)).)))))))..................... ( -27.40) >consensus CCUGGGAUUUCUCCGCAGCCUGGCUGCCUUUAAUCCCCUGCCCUGACUCAUAAAAACCCUUUAGACUAAGGGCAUUUAUUUCUCAGAGAACUAUUCCAGCCUAAUCACAUAAAAAUACCC .(((((((((((.........(((...............)))((((...(((((.((((((......)))))).)))))...))))))))..)))))))..................... (-27.81 = -24.94 + -2.87)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
