Structure #52265
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | + |
| Position | 120,510,955 - 120,511,074 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 84.08 |
| Columns | 120 |
| Mean single MFE | -36.77 |
| Consensus MFE | -22.34 |
| Combinations/base pair | 40 / 32 = 1.25 |
| SCI | 0.61 |
| z-score | -2.47 |
| RNA class probability | 0.835985 |
This structure is part of cluster 26388
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 84.08 Mean single sequence MFE: -36.77 Consensus MFE: -22.34 Energy contribution: -21.34 Covariance contribution: -1.00 Mean z-score: -2.47 Structure conservation index: 0.61 SVM decision value: 0.73 SVM RNA-class probability: 0.835985 Prediction: RNA ###################################################################### >hg17.chr12/120510955-120511074 AAUAAAUGCCCUCAGUCUAAAGGGCUUUUACGAGCCAGGGCAGGGGAUUAAAGGCGGCCGGGCUGUGGAGAAAUCCCAGGGUUAGGAGACAGCUGAGCAUGGAGACUUUUAAUCUAAAC ......((((((..........(((((....)))))))))))..(((((((((((..(((.((((.(((....))))..((((.(....))))).))).))).).)))))))))).... ( -39.50) >mm5.chr5/120537792-120537911 AAUAAAUACCCUUGGUCUAAAGGGUUUUUAUGAGUCAGGACAGAGGAUUAAAGGCAGCCAGGCUCCACAGAAAUCCCAGGGUCAGGGACUGCCGAGGAUUGGAGACUUUUAAUCUAAAC .(((((.((((((......)))))).))))).............((((((((((...((((.(((..(((...((((.......)))))))..)))..))))...)))))))))).... ( -35.60) >rn3.chr12/12133579-12133461 AAUAAAUACCCUUAGUCCAAAGGGUUUUUAUGAGCCAGGGCAAAGGAUUAAAGGCAGCCAGGCUCCAGAGAAAUCCCAGGGUCAGGGACUGCCGAGGAUGGAGACUUUUAAUCUAAAC .(((((.((((((......)))))).)))))..((....))...(((((((((((((((.(((((..((....))...)))))..)).)))))......(....).)))))))).... ( -39.00) >canFam1.chr26/30225575-30225456 AAUAAAUGCCUUCAGUCUAAAAAGCUUUUACAAGUCAGGACAGGGGAUUAAAGGCAAUCCAGCAGAGGAGAAAUCCCAGGGUCAGGAGACCUCUGAGCAUGGAGACUUUUAAUUUAAAC ........(((...((((.....((((....))))..)))))))((((((((((...((((((...(((....)))(((((((....)))).))).)).))))..)))))))))).... ( -33.00) >consensus AAUAAAUACCCUCAGUCUAAAGGGCUUUUACGAGCCAGGACAGAGGAUUAAAGGCAGCCAGGCUCCAGAGAAAUCCCAGGGUCAGG_GACUGCCGAGCA_UGGAGACUUUUAAUCUAAAC ..((((.((((((......)))))).))))...((....))...((((((((((...(((...(((.......((((.......)).)).......))).)))...)))))))))).... (-22.34 = -21.34 + -1.00)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
