Structure #52267
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr12 |
| Strand | - |
| Position | 120,510,955 - 120,511,074 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 84.08 |
| Columns | 120 |
| Mean single MFE | -31.55 |
| Consensus MFE | -22.69 |
| Combinations/base pair | 44 / 35 = 1.26 |
| SCI | 0.72 |
| z-score | -1.96 |
| RNA class probability | 0.833567 |
This structure is part of cluster 26388
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 84.08 Mean single sequence MFE: -31.55 Consensus MFE: -22.69 Energy contribution: -21.25 Covariance contribution: -1.44 Mean z-score: -1.96 Structure conservation index: 0.72 SVM decision value: 0.72 SVM RNA-class probability: 0.833567 Prediction: RNA ###################################################################### >hg17.chr12/120511074-120510955 GUUUAGAUUAAAAGUCUCCAUGCUCAGCUGUCUCCUAACCCUGGGAUUUCUCCACAGCCCGGCCGCCUUUAAUCCCCUGCCCUGGCUCGUAAAAGCCCUUUAGACUGAGGGCAUUUAUU .....(((((((.((......(((..(((((.(((((....))))).......)))))..))).)).)))))))....((....))..(((((.((((((......)))))).))))). ( -28.90) >mm5.chr5/120537911-120537792 GUUUAGAUUAAAAGUCUCCAAUCCUCGGCAGUCCCUGACCCUGGGAUUUCUGUGGAGCCUGGCUGCCUUUAAUCCUCUGUCCUGACUCAUAAAAACCCUUUAGACCAAGGGUAUUUAUU .....(((((((.((..(((.(((.(((.((((((.......)))))).))).)))...)))..)).)))))))..............(((((.((((((......)))))).))))). ( -35.10) >rn3.chr12/12133461-12133579 GUUUAGAUUAAAAGUCUCCAUCCUCGGCAGUCCCUGACCCUGGGAUUUCUCUGGAGCCUGGCUGCCUUUAAUCCUUUGCCCUGGCUCAUAAAAACCCUUUGGACUAAGGGUAUUUAUU .....(((((((.((..((((((..((.((((((.......)))))).))..)))...)))..)).)))))))....((....))..(((((.((((((......)))))).))))). ( -33.60) >canFam1.chr26/30225456-30225575 GUUUAAAUUAAAAGUCUCCAUGCUCAGAGGUCUCCUGACCCUGGGAUUUCUCCUCUGCUGGAUUGCCUUUAAUCCCCUGUCCUGACUUGUAAAAGCUUUUUAGACUGAAGGCAUUUAUU ...........(((((......(((((.((((....)))))))))..............((((((....))))))........)))))(((((.((((((......)))))).))))). ( -28.60) >consensus GUUUAGAUUAAAAGUCUCCA_UCCUCAGCAGUC_CCUGACCCUGGGAUUUCUCCGCAGCCUGGCUGCCUUUAAUCCCCUGCCCUGACUCAUAAAAACCCUUUAGACUAAGGGCAUUUAUU .....(((((((.((..((..(((..((.((((.((.......)))))).))..)))....))..)).)))))))....((....))..(((((.((((((......)))))).))))). (-22.69 = -21.25 + -1.44)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
