Structure #53380
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr13 |
| Strand | + |
| Position | 39,976,417 - 39,976,537 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 88.04 |
| Columns | 120 |
| Mean single MFE | -26.51 |
| Consensus MFE | -20.56 |
| Combinations/base pair | 38 / 31 = 1.23 |
| SCI | 0.78 |
| z-score | -2.71 |
| RNA class probability | 0.965525 |
This structure is part of cluster 27091
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 88.04 Mean single sequence MFE: -26.51 Consensus MFE: -20.56 Energy contribution: -20.75 Covariance contribution: 0.19 Mean z-score: -2.71 Structure conservation index: 0.78 SVM decision value: 1.58 SVM RNA-class probability: 0.965525 Prediction: RNA ###################################################################### >hg17.chr13/39976417-39976537 AUCAGACACUGGCUACCACUAUCUGUCAUCAGAUAAUAUCCUUUUCCUCCCACUAGCCAACUGGAUUUUGAACCUGAAAUACCCUUAGAAGGAUAUUUUCAUUUUAGUUCGUAGUCUGGC .((((((((..((((....((((((....))))))((((((((((.......((((....))))(((((......)))))......))))))))))........))))..)).)))))). ( -29.20) >mm5.chr3/108106522-108106403 AUCAGAGGCCGGCUUCCACUCUCUGUCAUCAGAUAAGAUCCCCUUCCUCCUACAAGCCAACUGGAAUUUGAACCUGAAAUACCCUUAGAAGGAUAUUUUCAUUUCAAUCACAGUCUGGC ....((((..((..((.....((((....))))...))..))...))))......((((((((....(((((...((((((.(((....))).))))))...)))))...)))).)))) ( -28.20) >rn3.chr2/117031109-117030991 AUCAGAUGUUGGCUUCCACUAUCUGUCAUCAGAUAAUAUCCCUUUCCUCCCACAGCCAACUGGAAUCUGAACCUGAAAUACCCUUAGAAGGAUAUUUUCAUUUUAAUAACAGUCUGGC .(((((((((((((.....((((((....))))))..................)))))))((..((..(((...((((((.(((....))).))))))..)))..))..)))))))). ( -23.00) >canFam1.chr25/50708501-50708381 GUCAGACAUUGGCUACCACUAUCUAUCAUCAGAUAAUAUCCUUUUCCUCCCACUAGCCAACUGGAUUCUGAAUCUAAAAUACCCUUAGAAGGAUAUUUUCAUUUCAGUUCAUAAUCUGGC (((((((((((((((....(((((......)))))..................))))))).))((..(((((...((((((.(((....))).))))))...))))).))....)))))) ( -25.65) >consensus AUCAGACACUGGCUACCACUAUCUGUCAUCAGAUAAUAUCCCUUUCCUCCCACUAGCCAACUGGAAUCUGAACCUGAAAUACCCUUAGAAGGAUAUUUUCAUUUCAA_UCACAGUCUGGC ..((((((.(((...))).))))))..............................((((((((....(((((...((((((.(((....))).))))))...)))))....)))).)))) (-20.56 = -20.75 + 0.19)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
