Structure #53384

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr13
Strand	+
Position	39,976,457 - 39,976,573
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.19
Columns	120
Mean single MFE	-35.68
Consensus MFE	-29.46
Combinations/base pair	44 / 34 = 1.29
SCI	0.83
z-score	-2.44
RNA class probability	0.985861

This structure is part of cluster 27091

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.19
 Mean single sequence MFE: -35.67
 Consensus MFE: -29.46
 Energy contribution: -27.77
 Covariance contribution:  -1.69
 Mean z-score:  -2.44
 Structure conservation index:   0.83
 SVM decision value:   2.02
 SVM RNA-class probability: 0.985861
 Prediction: RNA

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>hg17.chr13/39976457-39976573
CUUUUCCUCCCACUAGCCAACUGGAUUUUGAACCUGAAAUACCCUUAGAAGGAUAUUUUCAUUUUAGUUCGUAGUCUGGCUGCAGCCUCAGCCAGGCAGGCGGGCAGGAUACAAGG
(((.(((((((.((.(((....(((((.(((((.(((((((.(((....))).)).))))).....))))).)))))(((((......))))).))).)).))).))))...))). ( -38.30)
>mm5.chr3/108106553-108106443
CCCUUCCUCCUACAAGCCAACUGGAAUUUGAACCUGAAAUACCCUUAGAAGGAUAUUUUCAUUUCAAUCACAGUCUGGCCGUAGCAUCGGCCAGCCAGGCAGGAUACGGG
(((.(((((((........((((....(((((...((((((.(((....))).))))))...)))))...))))(((((((......)))))))..))).))))...))) ( -36.90)
>rn3.chr2/117031140-117031031
CCUUUCCUCCCACAGCCAACUGGAAUCUGAACCUGAAAUACCCUUAGAAGGAUAUUUUCAUUUUAAUAACAGUCUGGCUGCAGCACCGGCCAGCCAGGCAGGAUAUAGG
(((.((((.((.((((((((((..((..(((...((((((.(((....))).))))))..)))..))..)))).)))))).......((....)).)).))))...))) ( -32.00)
>canFam1.chr25/50708541-50708421
CUUUUCCUCCCACUAGCCAACUGGAUUCUGAAUCUAAAAUACCCUUAGAAGGAUAUUUUCAUUUCAGUUCAUAAUCUGGCUGCAGGCUCAGCCAGCUGGGGAGGCAGGCAGGAUGCAAGG
.....((((((.((((....))))...(((((...((((((.(((....))).))))))...)))))........(((((((......)))))))...))))))...((.....)).... ( -35.50)
>consensus
CCUUUCCUCCCACUAGCCAACUGGAAUCUGAACCUGAAAUACCCUUAGAAGGAUAUUUUCAUUUCAA_UCACAGUCUGGCUGCAGCAUCAGCCAGCCA________GGCAGGAUAC_AGG
(((.((((.((........((((....(((((...((((((.(((....))).))))))...)))))....))))(((((((......)))))))...........)).))))....))) (-29.46 = -27.77 +  -1.69)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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