Structure #53385

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr13
Strand	-
Position	39,976,457 - 39,976,573
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.19
Columns	120
Mean single MFE	-43.1
Consensus MFE	-31.12
Combinations/base pair	44 / 37 = 1.19
SCI	0.72
z-score	-3.58
RNA class probability	0.998737

This structure is part of cluster 27091

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.19
 Mean single sequence MFE: -43.10
 Consensus MFE: -31.12
 Energy contribution: -32.12
 Covariance contribution:   1.00
 Mean z-score:  -3.58
 Structure conservation index:   0.72
 SVM decision value:   3.21
 SVM RNA-class probability: 0.998737
 Prediction: RNA

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>hg17.chr13/39976573-39976457
CCUUGUAUCCUGCCCGCCUGCCUGGCUGAGGCUGCAGCCAGACUACGAACUAAAAUGAAAAUAUCCUUCUAAGGGUAUUUCAGGUUCAAAAUCCAGUUGGCUAGUGGGAGGAAAAG
.......((((.(((((..(((.(((((.(((....))).......(((((....(((((.((((((....))))))))))))))))......))))))))..))))))))).... ( -43.10)
>mm5.chr3/108106443-108106553
CCCGUAUCCUGCCUGGCUGGCCGAUGCUACGGCCAGACUGUGAUUGAAAUGAAAAUAUCCUUCUAAGGGUAUUUCAGGUUCAAAUUCCAGUUGGCUUGUAGGAGGAAGGG
(((...((((((..(((((((((......))))).(((((..((((((.(((((.((((((....)))))))))))..))).)))..))))))))).))))))....))) ( -46.50)
>rn3.chr2/117031031-117031140
CCUAUAUCCUGCCUGGCUGGCCGGUGCUGCAGCCAGACUGUUAUUAAAAUGAAAAUAUCCUUCUAAGGGUAUUUCAGGUUCAGAUUCCAGUUGGCUGUGGGAGGAAAGG
(((...((((((((((....)))).)).((((((((.(((..(((((..(((((.((((((....)))))))))))..))..)))..)))))))))))))))....))) ( -40.20)
>canFam1.chr25/50708421-50708541
CCUUGCAUCCUGCCUGCCUCCCCAGCUGGCUGAGCCUGCAGCCAGAUUAUGAACUGAAAUGAAAAUAUCCUUCUAAGGGUAUUUUAGAUUCAGAAUCCAGUUGGCUAGUGGGAGGAAAAG
.......((((.((..(....(((((((((((.((.....)))))........(((((...((((((((((....))))))))))...)))))...))))))))...)..)))))).... ( -42.60)
>consensus
CCU_GUAUCCUGCC________UGGCUGGCCGAGGCUGCAGCCAGACUAUGA_CUAAAAUGAAAAUAUCCUUCUAAGGGUAUUUCAGGUUCAAAAUCCAGUUGGCUAGUGGGAGGAAAAG
((((.(((...(((...........(((((((......)))))))((((....(((((.(((((.((((((....)))))))))))..)))))....)))).)))..))).))))..... (-31.12 = -32.12 +   1.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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