Structure #53386
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr13 |
| Strand | + |
| Position | 39,976,497 - 39,976,587 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 80.95 |
| Columns | 94 |
| Mean single MFE | -26.65 |
| Consensus MFE | -19.52 |
| Combinations/base pair | 25 / 20 = 1.25 |
| SCI | 0.73 |
| z-score | -1.47 |
| RNA class probability | 0.5 |
This structure is part of cluster 27091
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 94 Columns: 94 Strand: + Mean pairwise identity: 80.95 Mean single sequence MFE: -26.65 Consensus MFE: -19.52 Energy contribution: -18.78 Covariance contribution: -0.75 Mean z-score: -1.47 Structure conservation index: 0.73 SVM decision value: -0.07 SVM RNA-class probability: 0.500000 Prediction: no RNA ###################################################################### >hg17.chr13/39976497-39976587 ACCCUUAGAAGGAUAUUUUCAUUUUAGUUCGUAGUCUGGCUGCAGCCUCAGCCAGGCAGGCGGGCAGGAUACAAGGGUCACCACACAUUC ((((((....(((....)))(((((.((((((.(((((((((......)))))))))..)))))))))))..))))))............ ( -31.00) >mm5.chr3/108106567-108106483 ACCCUUAGAAGGAUAUUUUCAUUUCAAUCACAGUCUGGCCGUAGCAUCGGCCAGCCAGGCAGGAUACGGGGUCAGCACACACUC (((((..((((((.....)).)))).......(.(((((((......))))))).)...........)))))............ ( -22.00) >rn3.chr2/117031154-117031070 ACCCUUAGAAGGAUAUUUUCAUUUUAAUAACAGUCUGGCUGCAGCACCGGCCAGCCAGGCAGGAUAUAGGGUCAGCACACACUC ((((((((((.((.....)).)))))).....(((((((((..((....)))))))))))........))))............ ( -24.60) >canFam1.chr25/50708555-50708461 ACCCUUAGAAGGAUAUUUUCAUUUCAGUUCAUAAUCUGGCUGCAGGCUCAGCCAGCUGGGGAGGCAGGCAGGAUGCAAGGGUCACCACACAUUC ((((((.((((((.....)).)))).........((((.((((...(((((....)))))...)))).))))....))))))............ ( -29.00) >consensus ACCCUUAGAAGGAUAUUUUCAUUUCAA_UCACAGUCUGGCUGCAGCAUCAGCCAGCCA________GGCAGGAUAC_AGGGUCACCACACACUC ((((((.((((((.....)).))))........(.(((((((......))))))).)...................))))))............ (-19.52 = -18.78 + -0.75)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
