Structure #53603

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr13
Strand	+
Position	43,744,032 - 43,744,208
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.12
Columns	183
Mean single MFE	-54.49
Consensus MFE	-31.15
Combinations/base pair	45 / 39 = 1.15
SCI	0.57
z-score	-3.1
RNA class probability	0.994696

This structure is part of cluster 27222

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 183
 Columns: 183
 Strand: +
 Mean pairwise identity:  79.12
 Mean single sequence MFE: -54.49
 Consensus MFE: -31.15
 Energy contribution: -33.77
 Covariance contribution:   2.62
 Mean z-score:  -3.10
 Structure conservation index:   0.57
 SVM decision value:   2.50
 SVM RNA-class probability: 0.994696
 Prediction: RNA

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>hg17.chr13/43744032-43744208
CUCUAGAAGGGAUCACUCCCUUGUUCUCACUGUUUUACUGGCCUCCUGAGUGCUAUGCCCACAUACAGCAGUAAUCUAAUUUCCAUCUGGUCAACCUCCAGGAGCUAUUUUGAGUCUGGCCUGAAUUUAGUCCACUUUUCCUGCCAGUGCAGACUCAGGCCCUCUACUCUCCUGGG
..((((((((((....))))).............((((((((((....)).))((((....))))...))))))...........))))).......(((((((.......(((...(((((((....((....))....((((....))))..))))))))))....))))))). ( -47.10)
>mm5.chr14/48658863-48658681
CUCUAGAAGGGACCACUGCCCUGUUCUCACCGUCUUACUGGCCUUCCAAAAGCAUUGCCCACGCAGACCAGACCAGUUAUCUAAUUUCCUUCUGCUCAGCCCCCAGGAGCUAUUUUGGGCUUGGUCUGUGUGUGUCCUCCACUUUCCUGCCAGGACUGACUCAGCCCCUCUCCUCUCCUGGG
...(((((((((..((((..(((.((.....(((.....))).............(((....))))).)))..))))........))))))))).......((((((((.......(((((.((((.......(((((.((......))..))))).)))).))))).......)))))))) ( -51.24)
>rn3.chr15/52100628-52100446
CUCUAGAAGGGACCACUGCCCUGUGCUCACCAUCUUACUGGCCUCCCAAGAGCAUCGCCCACACAGACCAGAUCAUUUAUCUAAUUUCCUUCUGGUCAGCCCCCAGGAGCUAUUUUGGGCUUGGUCUCUGUGUGUACUCCACUUUCCUGCCAGGACUGACUCAGCCCUUCUCCUCUCCUGGG
....(((.((((.(((......))).)).)).)))....((((((....))).............(((((((..................))))))).)))((((((((.......(((((.((((.....(((.....)))..(((.....)))..)))).))))).......)))))))) ( -56.41)
>canFam1.chr22/54660217-54660045
CUCUAGAAGGGAUCAUUCCCUUCUCACCGUUUGGCUGGCCUCCCCAGGGUUACACCCACACAGGCCAGCAAUCUAAUUUCCAUCUGGUCAACCCCAGGAGCUAUUUUGGGUUUGGCCUGCUUUUAAUCCACUUUUCCUGCCAAUGCAGGCUCAGCCCCUCCACUCUCCAGGG
....((((((((....)))))))).((((..((((((((((.....(((.....)))....))))))))((......)).))..))))....(((.((((.......(((((.(((((((........................))))))).))))).......)))).))) ( -63.20)
>consensus
CUCUAGAAGGGACCACUCCCCUGUUCUCACCGUCUUACUGGCCUCCCAAGAGCAACGCCCACACA___CAGACCAGUAAUCUAAUUUCCAUCUGGUCAACCCCCAGGAGCUAUUUUGGGCUUGGCCUGUGUGU_GUCCAC__CUUUCCUGCCAGGACAGACUCAGCCCCUCUACUCUCCUGGG
..((((((((((..((......))..))........(((((.((.........................)).)))))..........))))))))......((((((((.......(((((.(((((((..........................))))))).))))).......)))))))) (-31.15 = -33.77 +   2.62)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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