Structure #53606
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr13 |
| Strand | - |
| Position | 43,744,032 - 43,744,208 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 79.12 |
| Columns | 183 |
| Mean single MFE | -64.95 |
| Consensus MFE | -36.63 |
| Combinations/base pair | 56 / 43 = 1.30 |
| SCI | 0.56 |
| z-score | -2.81 |
| RNA class probability | 0.982372 |
This structure is part of cluster 27222
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 183 Columns: 183 Strand: + Mean pairwise identity: 79.12 Mean single sequence MFE: -64.95 Consensus MFE: -36.63 Energy contribution: -38.63 Covariance contribution: 2.00 Mean z-score: -2.81 Structure conservation index: 0.56 SVM decision value: 1.91 SVM RNA-class probability: 0.982372 Prediction: RNA ###################################################################### >hg17.chr13/43744208-43744032 CCCAGGAGAGUAGAGGGCCUGAGUCUGCACUGGCAGGAAAAGUGGACUAAAUUCAGGCCAGACUCAAAAUAGCUCCUGGAGGUUGACCAGAUGGAAAUUAGAUUACUGCUGUAUGUGGGCAUAGCACUCAGGAGGCCAGUAAAACAGUGAGAACAAGGGAGUGAUCCCUUCUAGAG .(((((((....((((((((((((((((....))))....((....))..)))))))))...))).......))))))).((....)).........(((((((((((...(((...(((....(......)..))).)))...)))))).....(((((....)))))))))).. ( -55.90) >mm5.chr14/48658681-48658863 CCCAGGAGAGGAGAGGGGCUGAGUCAGUCCUGGCAGGAAAGUGGAGGACACACACAGACCAAGCCCAAAAUAGCUCCUGGGGGCUGAGCAGAAGGAAAUUAGAUAACUGGUCUGGUCUGCGUGGGCAAUGCUUUUGGAAGGCCAGUAAGACGGUGAGAACAGGGCAGUGGUCCCUUCUAGAG ((((((((.......(((((..(((..(((.....)))..(((.....))).....)))..))))).......)))))))).(((.((((((.(((...(((....))).)))..))))).).)))......(((((((((((........))).......((((....)))))))))))). ( -66.04) >rn3.chr15/52100446-52100628 CCCAGGAGAGGAGAAGGGCUGAGUCAGUCCUGGCAGGAAAGUGGAGUACACACAGAGACCAAGCCCAAAAUAGCUCCUGGGGGCUGACCAGAAGGAAAUUAGAUAAAUGAUCUGGUCUGUGUGGGCGAUGCUCUUGGGAGGCCAGUAAGAUGGUGAGCACAGGGCAGUGGUCCCUUCUAGAG ((((((((.......(((((..(((..(((.....)))..(((.....))).....)))..))))).......))))))))((((..(((..((.(...(((((.....)))))((((....))))..).))..)))..))))....(((.((.((.(((......))).)))).))).... ( -67.04) >canFam1.chr22/54660045-54660217 CCCUGGAGAGUGGAGGGGCUGAGCCUGCAUUGGCAGGAAAAGUGGAUUAAAAGCAGGCCAAACCCAAAAUAGCUCCUGGGGUUGACCAGAUGGAAAUUAGAUUGCUGGCCUGUGUGGGUGUAACCCUGGGGAGGCCAGCCAAACGGUGAGAAGGGAAUGAUCCCUUCUAGAG (((..(.((((...(((..((.(((((((((.((.......)).))).....))))))))..)))......)))))..)))...(((.(((....))).....((((((((.(.((((......)))).).)))))))).....))).((((((((....)))))))).... ( -70.80) >consensus CCCAGGAGAGGAGAGGGGCUGAGUCAGCACUGGCAGGAAAA__GAGGAC_AAACACAGACCAAACCCAAAAUAGCUCCUGGGGGCUGACCAGAAGGAAAUUAGAUAACUGGUCUG___UGUGUGGGCAAAGCUCUUGGGAGGCCAGUAAAACGGUGAGAACAGGGCAGUGAUCCCUUCUAGAG ((((((((.......(((((..((((((..........................))))))..))))).......))))))))........((((((..........((((((((......((.((((...)))).))..))))))))........((..((......))..)))))))).... (-36.63 = -38.63 + 2.00)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
