Structure #54191

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr13
Strand	-
Position	53,677,693 - 53,677,812
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	88.22
Columns	120
Mean single MFE	-30.15
Consensus MFE	-22.59
Combinations/base pair	45 / 36 = 1.25
SCI	0.75
z-score	-2
RNA class probability	0.818394

This structure is part of cluster 27543

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  88.22
 Mean single sequence MFE: -30.15
 Consensus MFE: -22.59
 Energy contribution: -22.03
 Covariance contribution:  -0.56
 Mean z-score:  -2.00
 Structure conservation index:   0.75
 SVM decision value:   0.67
 SVM RNA-class probability: 0.818394
 Prediction: RNA

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>hg17.chr13/53677812-53677693
UCUUCUCCCUUUCUCUUUAAAGGCUCUGAAAUAAUUGGAAGAAUAUUUUUAUUAUGCCAUCCAUCUGGAAAAGGAAGGUUGGAAUACUAUGAGAAGGGCCAUUUUUUUCUUGUGGUAUU
..((((..(((((.((((...(((...((((((.((....)).))))))......))).(((....))))))))))))..))))(((((..(((((((.....)))))))..))))).. ( -29.60)
>mm5.chr14/73066512-73066395
CCUUCUCCCUUUCUUUUUCAAGGCCCUGAAAUAAUUGGAAGAAUAUUUGUAUUGUGCCAUCUUUCUGGAAAGGAAGGCUGGGAUACUAUAAGAAGGGCCAUUCUUUCUUGAAGUAUU
..((((.((......(((((......))))).....)).)))).............((((((((((....))))))).)))((((((.(((((((((....))))))))).)))))) ( -30.30)
>rn3.chr15/62800212-62800095
CCUUCUCCCUUUCUUUUUCAAGGCCCUGAAAUAAUUGGAAGAAUAUUUGUAUUGUGCCAUCUUUCUGGAAAGGAAGGCUGGGAUACUAUAAGGAGGGCCAUUCUUUCUUGAAGUAUU
..((((.((......(((((......))))).....)).)))).............((((((((((....))))))).)))((((((.(((((((((....))))))))).)))))) ( -29.80)
>canFam1.chr22/14098477-14098358
UCUUCUUUUUUUUUUCUUUUAAGCCCCUGAAAUAAUUGGAAGAAUAUUUUUAUUAUACCAUCCAUCUGGAAAAGGAAGGCUGGGAUACUAUGAGAAGGGCCAUUCUUUCUUGUGGUAUU
((((((..((..((((............)))).))..))))))..............(((.((.(((......))).)).)))(((((((..(((((((....)))))))..))))))) ( -30.90)
>consensus
CCUUCUCCCUUUCU_CUUUCAAGGCCCUGAAAUAAUUGGAAGAAUAUUUGUAUUAUGCCAUCCAUCUGGAAA_GGAAGGCUGGGAUACUAUAAGAAGGGCCAUUCUUU_CUUGAAGUAUU
..((((.((.......(((((......))))).....)).)))).............(((.((((((......)))))).)))((((((((((((((((....))))).))))))))))) (-22.59 = -22.03 +  -0.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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