Structure #54414

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr13
Strand	-
Position	57,553,686 - 57,553,806
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	84.96
Columns	120
Mean single MFE	-34.35
Consensus MFE	-25.92
Combinations/base pair	31 / 26 = 1.19
SCI	0.75
z-score	-2.27
RNA class probability	0.937315

This structure is part of cluster 27659

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.96
 Mean single sequence MFE: -34.35
 Consensus MFE: -25.92
 Energy contribution: -25.05
 Covariance contribution:  -0.87
 Mean z-score:  -2.27
 Structure conservation index:   0.75
 SVM decision value:   1.26
 SVM RNA-class probability: 0.937315
 Prediction: RNA

######################################################################

>hg17.chr13/57553806-57553686
ACAUAAUCAGCAGCUUAUGGAGUAAAUGCCCCAUAAGCUGCUCUCUGAGUGAGCCCCACCUUGACAUGGCAGUAGAAAGGGAAGAUAUUGUAAUGUAAAACCCUGUAUUUAUAUAGAUCA
........((((((((((((.((....)).)))))))))))).((((.(((((((............))).......((((...((((....))))....))))....)))).))))... ( -32.30)
>mm5.chr14/76754349-76754231
ACUAUCAGCAGCUUAUGGGCUAAAUGCCACAUAAGCUGCUCUCUGAGUGAGCCCCACCCUGGCAUGACAGUGGGAAAUGAGAACAUUGUAAUGUAAAACCCUGUCUUUACAGAAAUCA
......((((((((((((((.....))).))))))))))).((((.....(((.......)))..(((((.((..((((....))))...........)))))))....))))..... ( -38.72)
>rn3.chr15/66911334-66911216
ACUAUCAGCAGCUUAUGGACUAAAUGCCACAUAAGCUGCUCGCUGAGUGGGCCCCACCCUGGCAUGACAGUGGGAGCCGAGAACAUUGUAAUGUAAAACCCUGUCUUUAUAGAAAUCA
(((..((((((((((((............))))))))))).)...))).((((((((..((......))))))).)))((((.((..((........))..))))))........... ( -33.30)
>canFam1.chr22/17163400-17163280
ACAUAAUCGGCAGCUUAUGGAGUAAAUGCCACAUAAGCUGCUCGCUGAGUGAGCCCCACCUGGACACGGCAGUGAAAAAGGAGAAUAUUGUCAUGUAAAACCCUGUAUUGAUAUAGAUCA
((((.....((((((((((..((....))..))))))))))((((((.(((..((......)).)))..)))))).................))))......(((((....))))).... ( -33.10)
>consensus
__ACAAUCAGCAGCUUAUGGACUAAAUGCCACAUAAGCUGCUCGCUGAGUGAGCCCCACCCUGACAUGACAGUGGAAAAGGAGAACAUUGUAAUGUAAAACCCUGUAUUUAUAGAAAUCA
........(((((((((((............)))))))))))....(((((.....)))....((((.((((((...........)))))).)))).....................)). (-25.92 = -25.05 +  -0.87)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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