Structure #54416

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr13
Strand	-
Position	57,553,726 - 57,553,846
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.09
Columns	120
Mean single MFE	-38.47
Consensus MFE	-24.2
Combinations/base pair	30 / 24 = 1.25
SCI	0.63
z-score	-2.51
RNA class probability	0.962321

This structure is part of cluster 27659

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.09
 Mean single sequence MFE: -38.47
 Consensus MFE: -24.20
 Energy contribution: -23.07
 Covariance contribution:  -1.13
 Mean z-score:  -2.51
 Structure conservation index:   0.63
 SVM decision value:   1.52
 SVM RNA-class probability: 0.962321
 Prediction: RNA

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>hg17.chr13/57553846-57553726
GUACCAUCUGUGAGAAACUGAGCCUCGCAGACUUUAAAGAACAUAAUCAGCAGCUUAUGGAGUAAAUGCCCCAUAAGCUGCUCUCUGAGUGAGCCCCACCUUGACAUGGCAGUAGAAAGG
......((((((((.........))))))))((((......(((....((((((((((((.((....)).))))))))))))......))).(((............))).....)))). ( -36.00)
>mm5.chr14/76754385-76754271
GCACCAUCUGUGAGAAACUGAACCCCAGACAUCAAGACUAUCAGCAGCUUAUGGGCUAAAUGCCACAUAAGCUGCUCUCUGAGUGAGCCCCACCCUGGCAUGACAGUGGGAAAU
...(((.((((((((..(((.....)))...............(((((((((((((.....))).)))))))))))))).......(((.......)))...)))))))..... ( -39.60)
>rn3.chr15/66911370-66911256
GCACCAUCUGUGAGAAACUGAACCCCAGAUAUCAAGACUAUCAGCAGCUUAUGGACUAAAUGCCACAUAAGCUGCUCGCUGAGUGGGCCCCACCCUGGCAUGACAGUGGGAGCC
.(((..((.((((....(((.....)))...............((((((((((............)))))))))))))).)))))((((((((..((......))))))).))) ( -36.80)
>canFam1.chr22/17163440-17163320
GUACCAUCUGUGAGAAGCCGUGGCUCACAGACACUAAAGAACAUAAUCGGCAGCUUAUGGAGUAAAUGCCACAUAAGCUGCUCGCUGAGUGAGCCCCACCUGGACACGGCAGUGAAAAAG
................((((((((((((..........((......))(((((((((((..((....))..)))))))))))......)))))).((....)).)))))).......... ( -41.50)
>consensus
GCACCAUCUGUGAGAAACUGAACCCC__AGACAUCAAA____ACAAUCAGCAGCUUAUGGACUAAAUGCCACAUAAGCUGCUCGCUGAGUGAGCCCCACCCUGACAUGACAGUGGAAAAG
.(((..(((((.((..................................(((((((((((............)))))))))))......(((.....))).)).))).))..)))...... (-24.20 = -23.07 +  -1.13)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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