Structure #54891

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr13
Strand	+
Position	64,513,162 - 64,513,257
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	89.07
Columns	95
Mean single MFE	-16.45
Consensus MFE	-11.55
Combinations/base pair	28 / 24 = 1.17
SCI	0.7
z-score	-1.75
RNA class probability	0.595049

This structure is part of cluster 27930

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 95
 Columns: 95
 Strand: +
 Mean pairwise identity:  89.07
 Mean single sequence MFE: -16.45
 Consensus MFE: -11.55
 Energy contribution: -11.93
 Covariance contribution:   0.37
 Mean z-score:  -1.75
 Structure conservation index:   0.70
 SVM decision value:   0.12
 SVM RNA-class probability: 0.595049
 Prediction: RNA

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>hg17.chr13/64513162-64513257
AAACAUCCUAUUUUAAGCCAACAGACACAUUCUCCAAUUAUUCAACUUGUCAACCACGAGCUGACAGUUAAAAGACCAGAACAGAUGGAACCAA
................................((((.((.(((....(((((.(.....).)))))(((....)))..))).)).))))..... (  -9.00)
>mm5.chr14/83461017-83461112
CAAACAUUCUGUCUGAAGUCAACAGAUGCAUUCUCUAAUUAUUCAACUCAUCAACCAUGAGCUGACAGUUAAAAGACCAGAAUAGAUGGAACCAA
....(((.(((((((..(((...(((.....))).(((((..(((.(((((.....))))).))).)))))...)))))).)))))))....... ( -16.40)
>rn3.chr15/74265359-74265454
AAACAUUCUGUCUGAAGUCAACAGAUGCAUUCUCCAAUUAUUCAACUCAUCAACCAUGAGCUGACAGUUAAAAGACCAGAAUAGAUGGAACCAA
......(((((.((....))))))).......((((.((((((..(((((.....)))))......(((....)))..)))))).))))..... ( -17.40)
>canFam1.chr22/23281725-23281820
AAACAUUCUGUUUUAAACCAACAGACACGUUCCCCAAUUAUUCAACUUGUCAGCCACGAGCUGACAGUUAAAAGACCAGGAUAGAUGGAACCAA
......((((((.......))))))...(((((....((((((....(((((((.....)))))))(((....)))..))))))..)))))... ( -23.00)
>consensus
_AAACAUUCUGUCUGAAGCCAACAGACACAUUCUCCAAUUAUUCAACUCAUCAACCACGAGCUGACAGUUAAAAGACCAGAAUAGAUGGAACCAA
.......((((((.......)))))).......((((.((((((..(((((.....)))))......(((....)))..)))))).))))..... (-11.55 = -11.93 +   0.37) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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