Structure #54893

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr13
Strand	-
Position	64,513,162 - 64,513,257
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	89.07
Columns	95
Mean single MFE	-27.25
Consensus MFE	-25.77
Combinations/base pair	33 / 26 = 1.27
SCI	0.95
z-score	-2.71
RNA class probability	0.996902

This structure is part of cluster 27930

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 95
 Columns: 95
 Strand: +
 Mean pairwise identity:  89.07
 Mean single sequence MFE: -27.25
 Consensus MFE: -25.77
 Energy contribution: -24.15
 Covariance contribution:  -1.62
 Mean z-score:  -2.71
 Structure conservation index:   0.95
 SVM decision value:   2.77
 SVM RNA-class probability: 0.996902
 Prediction: RNA

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>hg17.chr13/64513257-64513162
UUGGUUCCAUCUGUUCUGGUCUUUUAACUGUCAGCUCGUGGUUGACAAGUUGAAUAAUUGGAGAAUGUGUCUGUUGGCUUAAAAUAGGAUGUUU
.......(((((.(((..((..(((((((((((((.....)))))).)))))))..))..))).....(((....)))........)))))... ( -26.00)
>mm5.chr14/83461112-83461017
UUGGUUCCAUCUAUUCUGGUCUUUUAACUGUCAGCUCAUGGUUGAUGAGUUGAAUAAUUAGAGAAUGCAUCUGUUGACUUCAGACAGAAUGUUUG
.......((..(((((((.(((((......(((((((((.....)))))))))......))))).....((((.......)))))))))))..)) ( -25.30)
>rn3.chr15/74265454-74265359
UUGGUUCCAUCUAUUCUGGUCUUUUAACUGUCAGCUCAUGGUUGAUGAGUUGAAUAAUUGGAGAAUGCAUCUGUUGACUUCAGACAGAAUGUUU
.............(((..((..(((((((((((((.....)))))).)))))))..))..)))...(((((((((.......))))).)))).. ( -24.80)
>canFam1.chr22/23281820-23281725
UUGGUUCCAUCUAUCCUGGUCUUUUAACUGUCAGCUCGUGGCUGACAAGUUGAAUAAUUGGGGAACGUGUCUGUUGGUUUAAAACAGAAUGUUU
..............((..((..(((((((((((((.....)))))).)))))))..))..))((((((.((((((.......)))))))))))) ( -32.90)
>consensus
UUGGUUCCAUCUAUUCUGGUCUUUUAACUGUCAGCUCAUGGUUGACAAGUUGAAUAAUUGGAGAAUGCAUCUGUUGACUUAAAACAGAAUGUUU_
.............(((((((..(((((((((((((.....)))))).)))))))..)))))))......((((((.......))))))....... (-25.77 = -24.15 +  -1.62)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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