Structure #55253

Summary

Genome/Assembly hg17
Chromosome/Contig chr13
Strand -
Position 70,139,481 - 70,139,600
Number of sequences 5
Organisms human, mouse, rat, dog, chicken
Mean pairwise identity 93
Columns 120
Mean single MFE -32.58
Consensus MFE -27.44
Combinations/base pair 45 / 39 = 1.15
SCI 0.84
z-score -2.26
RNA class probability 0.993409

This structure is part of cluster 28132

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  93.00
 Mean single sequence MFE: -32.58
 Consensus MFE: -27.44
 Energy contribution: -27.76
 Covariance contribution:   0.32
 Mean z-score:  -2.26
 Structure conservation index:   0.84
 SVM decision value:   2.40
 SVM RNA-class probability: 0.993409
 Prediction: RNA

######################################################################

>hg17.chr13/70139600-70139481
AUGCCUACUUUAUCUGUCAAAACAAUGUCCUUUCUCAAAUAAAGGGCAUUGUUUCUGUAGCAAGAAAAGGUUCUGAUGUAUUGUUAUUUGCAAAUGGAUGGUGGAAUAAUGGAACAACA
.......((((.(((((((((((((((((((((.......)))))))))))))).))..)).)))))))((((((.(((.(..((((((......))))))..).))).)))))).... ( -29.70)
>mm5.chr14/89167550-89167430
AUGCCUGCUUUAUCUGUCAAAGCCAUGUCCCUUCUUAAAUAAAGGGCAUUGUUUCUGCAGCGAGGGAAAGGGUCUGAUGCAUUGUUAUCUGCAAAUGGAUGGCGGAAUAAUGGAACAACA
..((((.((((..((((..((((.(((.(((((........)))))))).))))..))))..))))...)))).((.(.((((((..(((((.........))))))))))).).))... ( -31.80)
>rn3.chr15/80403775-80403655
AUGCCUACUUUAUCUGUCAAAGCCAUGUCCCUUCUUAAAUAAAGGGCAUUGUUUCUGCAGCGAGGGAAAGGGUCUGAUGCAUUGUUAUCUGCAAAUGGAUGGCGGAAUAAUGGAACAACA
...(((.((((..((((..((((.(((.(((((........)))))))).))))..)))).))))...)))((.((.(.((((((..(((((.........))))))))))).).)))). ( -30.20)
>canFam1.chr22/27968952-27968832
AUGCCUACUUUAUCUGUCAAAACAAUGUCCUUUCUCAAAUAAAGGGCAUUGUUUCUGUAGCAAGAAAAAGGUUCUGAUGUAUUGUUAUCUGCAAAUGGAUGGCGGAAUAAUGGAACAACA
.......((((.(((((((((((((((((((((.......)))))))))))))).))..)).))).))))((((((.(((.(((((((((......))))))))).))).)))))).... ( -35.50)
>galGal2.chr1/42830836-42830956
AUGCCUACUUUAUCUGUCAAAACAAUGUCCUUUCUCAAAUAAAGGGCAUUGUUUCUGCAGUAAGAAAAAGGUUCUGAUAUAUUGUUAUCUGCAAAUGGAUGGUGGAAUAAUGGAACAACA
.......(((...((((..((((((((((((((.......))))))))))))))..)))).)))......((((((.(((.(..((((((......))))))..).))).)))))).... ( -35.70)
>consensus
AUGCCUACUUUAUCUGUCAAAACAAUGUCCUUUCUCAAAUAAAGGGCAUUGUUUCUGCAGCAAGAAAAAGGUUCUGAUGUAUUGUUAUCUGCAAAUGGAUGGCGGAAUAAUGGAACAACA
.......(((...((((..((((((((((((((.......))))))))))))))..)))).)))......((((((.(((.(((((((((......))))))))).))).)))))).... (-27.44 = -27.76 +   0.32) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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