Structure #55257

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr13
Strand	+
Position	70,139,521 - 70,139,639
Number of sequences	5
Organisms	human, mouse, rat, dog, chicken
Mean pairwise identity	91.17
Columns	120
Mean single MFE	-29.15
Consensus MFE	-23.22
Combinations/base pair	37 / 33 = 1.12
SCI	0.8
z-score	-1.76
RNA class probability	0.841702

This structure is part of cluster 28132

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  91.17
 Mean single sequence MFE: -29.15
 Consensus MFE: -23.22
 Energy contribution: -24.10
 Covariance contribution:   0.88
 Mean z-score:  -1.76
 Structure conservation index:   0.80
 SVM decision value:   0.75
 SVM RNA-class probability: 0.841702
 Prediction: RNA

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>hg17.chr13/70139521-70139639
ACAUCAGAACCUUUUCUUGCUACAGAAACAAUGCCCUUUAUUUGAGAAAGGACAUUGUUUUGACAGAUAAAGUAGGCAUUUGAUAAAUUGAAACAGGUUUUGAAUUAUUUUGAGAGAA
...(((((((((((((........(((((((((.(((((.......))))).)))))))))..(((((.........))))).......)))).)))))))))............... ( -27.50)
>mm5.chr14/89167470-89167590
GCAUCAGACCCUUUCCCUCGCUGCAGAAACAAUGCCCUUUAUUUAAGAAGGGACAUGGCUUUGACAGAUAAAGCAGGCAUUUGAUAAAUUGAAACAGGUUCUGAAUUAUUUUGUUGGGAA
............(((((...(((((((..((.((((((((......)))))).))))..)))).)))((((..((((.(((((...........)))))))))..))))......))))) ( -27.30)
>rn3.chr15/80403695-80403815
GCAUCAGACCCUUUCCCUCGCUGCAGAAACAAUGCCCUUUAUUUAAGAAGGGACAUGGCUUUGACAGAUAAAGUAGGCAUUUGAUAAAUUGAAACAGGUUCUGAAUUAUUUUGUUGGGAA
..((((((.(((........(((((((..((.((((((((......)))))).))))..)))).))).......)))..)))))).............((((.(((......))).)))) ( -26.16)
>canFam1.chr22/27968872-27968992
ACAUCAGAACCUUUUUCUUGCUACAGAAACAAUGCCCUUUAUUUGAGAAAGGACAUUGUUUUGACAGAUAAAGUAGGCAUUUGAUAAAUUGAAACAGGUUCUGAAUUAUUUUGAGGGGAA
...(((((((((.((((........(((((((((.(((((.......))))).)))))))))..(((((.........))))).......)))).)))))))))................ ( -31.30)
>galGal2.chr1/42830996-42830876
AUAUCAGAACCUUUUUCUUACUGCAGAAACAAUGCCCUUUAUUUGAGAAAGGACAUUGUUUUGACAGAUAAAGUAGGCAUUUGAUAAAUUGGCACAGGUUCUGAAUUAUUUUGAGGGGAA
...(((((((((........(((..(((((((((.(((((.......))))).)))))))))..))).....((.(.((.((....)).)).))))))))))))................ ( -33.50)
>consensus
ACAUCAGAACCUUUCUCUUGCUGCAGAAACAAUGCCCUUUAUUUGAGAAAGGACAUUGUUUUGACAGAUAAAGUAGGCAUUUGAUAAAUUGAAACAGGUUCUGAAUUAUUUUGAGGGGAA
...(((((((((....((((((...(((((((((.(((((.......))))).))))))))).........))))))((.((....)).))....)))))))))................ (-23.22 = -24.10 +   0.88) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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