Structure #55261
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr13 |
| Strand | - |
| Position | 70,139,521 - 70,139,639 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 91.17 |
| Columns | 120 |
| Mean single MFE | -28.68 |
| Consensus MFE | -26.2 |
| Combinations/base pair | 38 / 34 = 1.12 |
| SCI | 0.91 |
| z-score | -3.11 |
| RNA class probability | 0.999957 |
This structure is part of cluster 28132
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 91.17 Mean single sequence MFE: -28.68 Consensus MFE: -26.20 Energy contribution: -27.48 Covariance contribution: 1.28 Mean z-score: -3.11 Structure conservation index: 0.91 SVM decision value: 4.86 SVM RNA-class probability: 0.999957 Prediction: RNA ###################################################################### >hg17.chr13/70139639-70139521 UUCUCUCAAAAUAAUUCAAAACCUGUUUCAAUUUAUCAAAUGCCUACUUUAUCUGUCAAAACAAUGUCCUUUCUCAAAUAAAGGGCAUUGUUUCUGUAGCAAGAAAAGGUUCUGAUGU .................................(((((...((((..(((..(((.((((((((((((((((.......)))))))))))))).)))))..)))..))))..))))). ( -25.10) >mm5.chr14/89167590-89167470 UUCCCAACAAAAUAAUUCAGAACCUGUUUCAAUUUAUCAAAUGCCUGCUUUAUCUGUCAAAGCCAUGUCCCUUCUUAAAUAAAGGGCAUUGUUUCUGCAGCGAGGGAAAGGGUCUGAUGC ................(((((.(((.((((.......((......))((((..((((..((((.(((.(((((........)))))))).))))..)))).))))))))))))))))... ( -26.00) >rn3.chr15/80403815-80403695 UUCCCAACAAAAUAAUUCAGAACCUGUUUCAAUUUAUCAAAUGCCUACUUUAUCUGUCAAAGCCAUGUCCCUUCUUAAAUAAAGGGCAUUGUUUCUGCAGCGAGGGAAAGGGUCUGAUGC ................(((((.(((.((((.(((.....))).....((((..((((..((((.(((.(((((........)))))))).))))..)))).))))))))))))))))... ( -25.80) >canFam1.chr22/27968992-27968872 UUCCCCUCAAAAUAAUUCAGAACCUGUUUCAAUUUAUCAAAUGCCUACUUUAUCUGUCAAAACAAUGUCCUUUCUCAAAUAAAGGGCAUUGUUUCUGUAGCAAGAAAAAGGUUCUGAUGU ................(((((((((.((((.(((.....)))...........(((.((((((((((((((((.......)))))))))))))).)))))...)))).)))))))))... ( -31.80) >galGal2.chr1/42830876-42830996 UUCCCCUCAAAAUAAUUCAGAACCUGUGCCAAUUUAUCAAAUGCCUACUUUAUCUGUCAAAACAAUGUCCUUUCUCAAAUAAAGGGCAUUGUUUCUGCAGUAAGAAAAAGGUUCUGAUAU ................(((((((((..((.............))...(((...((((..((((((((((((((.......))))))))))))))..)))).)))....)))))))))... ( -34.72) >consensus UUCCCAACAAAAUAAUUCAGAACCUGUUUCAAUUUAUCAAAUGCCUACUUUAUCUGUCAAAACAAUGUCCUUUCUCAAAUAAAGGGCAUUGUUUCUGCAGCAAGAAAAAGGUUCUGAUGU ................(((((((((.((((.(((.....)))...........((((..((((((((((((((.......))))))))))))))..))))...)))).)))))))))... (-26.20 = -27.48 + 1.28)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
