Structure #56926

Summary

Genome/Assembly hg17
Chromosome/Contig chr13
Strand -
Position 94,774,638 - 94,774,757
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 81.4
Columns 120
Mean single MFE -40.23
Consensus MFE -28.76
Combinations/base pair 45 / 33 = 1.36
SCI 0.72
z-score -2.32
RNA class probability 0.965953

This structure is part of cluster 29090

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.40
 Mean single sequence MFE: -40.23
 Consensus MFE: -28.76
 Energy contribution: -28.45
 Covariance contribution:  -0.31
 Mean z-score:  -2.32
 Structure conservation index:   0.72
 SVM decision value:   1.59
 SVM RNA-class probability: 0.965953
 Prediction: RNA

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>hg17.chr13/94774757-94774638
AGUACUGUCUAAACAAAGGCCAGCAUUUUCUGUUUGGGGAAACCAGGGGAGGAAAAACCUUCGGGCCACAUCCUGCUGAUAUCAUUGAGAGGCUCAAUGGCAGGAUAAGGCCCUGAGUG
.((...((((......))))..)).((((((.((..((....))..)).))))))...(((.(((((..(((((((......(((((((...))))))))))))))..))))).))).. ( -43.40)
>mm5.chr14/111040516-111040398
AUGUGCUGCCUAGACAAAAGACUGCAUUUUGUGUUUUAGGAAGUCAGGGGAGGAAAAUAUCCAGGCCGCAUCCUGUUGAUAUCCUAGGAGGCUCAAAGGCAGGAUAAGGCUCUGAGUG
.(((.((((((..((((((.......)))))).((((((((.((((((((((((.....))).(....).)))).))))).)))))))).......)))))).)))............ ( -33.00)
>rn3.chr15/103640558-103640440
ACGUGCUGCCCAGACAAAAGACCGCAUUUUGUGUCUUAGGAAGCCAGGGGAGGGAAAUAUCCAGGCCAUAUCCUGUUGAUAUCCUAGGAGGCUCAAAGGCAGGAUAAGGCUCUGAGUG
.....((.(((......(((((.((.....))))))).((...)).))).)).........((((((.(((((((((((..((....))...)))...)))))))).))).))).... ( -35.30)
>canFam1.chr22/15237869-15237987
AGUACUGUUUAGACAAAGGAUGGCAUUUUCUGUUUGGGGAAACCGGGAGAGGAAAAUCCUUGGGGCCAUAUCCUGCUGAUACCCUAGGAGACUCAAUAGCAGGAUAAGGCCCUGAGUG
..((((.........((((((....((((((.(((.((....)).))).))))))))))))((((((.((((((((((.......((....))...)))))))))).)))))).)))) ( -49.20)
>consensus
A_GUACUGCCUAGACAAAAGACAGCAUUUUCUGUUUGAGGAAACCAGGGGAGGAAAA_CAUCCAGGCCACAUCCUGCUGAUAUC_CUAGGAGGCUCAAAGGCAGGAUAAGGCCCUGAGUG
.....((.((((((((.((((.....)))).))))).((....)).))).)).......(((.(((((.(((((((((.....................))))))))).))))).))).. (-28.76 = -28.45 +  -0.31) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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