Structure #57467

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr13
Strand	-
Position	104,046,105 - 104,046,204
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	75.66
Columns	99
Mean single MFE	-22.06
Consensus MFE	-6.25
Combinations/base pair	26 / 18 = 1.44
SCI	0.28
z-score	-1.95
RNA class probability	0.852306

This structure is part of cluster 29420

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 99
 Columns: 99
 Strand: +
 Mean pairwise identity:  75.66
 Mean single sequence MFE: -22.06
 Consensus MFE:  -6.25
 Energy contribution:  -5.89
 Covariance contribution:  -0.36
 Mean z-score:  -1.95
 Structure conservation index:   0.28
 SVM decision value:   0.79
 SVM RNA-class probability: 0.852306
 Prediction: RNA

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>hg17.chr13/104046204-104046105
CUUAAUUCACAGCCUGUUUAAAAUAGCACCAUCUCUGAUAGCUGUAAUCAGUUCCAUAACAACUGCUCCUGCUGCCACUUUGCAAAUCAGGCUGUGAGU
....((((((((((((........((((.......((..(((((....))))).)).......))))..(((.........)))...)))))))))))) ( -26.64)
>canFam1.chr22/56801728-56801629
CUUAAUCCACAGCCUAUUUAAAAUAGCACAAUCUCUAAGAGCUGUAAUUAGUUUCCUAACAGCUCUUCCUCCUGCCACUUUGCAAAUCAGGCUGGGAGU
.....(((.((((((.....................(((((((((...(((....)))))))))))).....(((......)))....))))))))).. ( -27.70)
>mm5.chr8/6591296-6591197
CUUAAUUCACAUCCUGUUUAAAAUAGACCCAUCUCUGAUAGCUGUAAUUAGCUUCAUAACAGUUCUUCCCGCUGCCACUUGGCAAAGCCAGCUCUGAGU
....(((((....(((((......(((......)))((.(((((....)))))))..)))))........((((((....)))..)))......))))) ( -16.40)
>rn3.chr16/1863748-1863845
CUUAAUUCACAGCCUGUUUAAAAUAGUACCAUCUCUGAUAGCUGUAAUUAGCUUCAUAACAGUUCUUCCCGCUGCCACUUGGCAAUGCCGACUGAGU
.((((((.(((((.((((..................)))))))))))))))........(((((.....((.((((....)))).))..)))))... ( -17.47)
>galGal2.chr1/53515274-53515373
CCUAAUUCAUGGACCAUUUAAAACAGAACUACUGCUGGUAGCCAUAAUUAGUUUCACAGGAACUCUUCCUUCUGCUGCUGCUUGAGUGAGACUGCUUGU
.((((((.((((((((.......(((.....))).))))..))))))))))....(((((...(((..(((..((....))..)))..)))...))))) ( -22.10)
>consensus
CUUAAUUCACAGCCUGUUUAAAAUAGAACCAUCUCUGAUAGCUGUAAUUAGUUUCAUAACAGCUCUUCCUGCUGCCACUUGGCAAAUCAGGCUGUGAGU
.((((((.((((.(((((..................))))))))))))))).....................(((......)))............... ( -6.25 =  -5.89 +  -0.36)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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