Structure #59768
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr14 |
| Strand | + |
| Position | 35,301,756 - 35,301,897 |
| Number of sequences | 6 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish |
| Mean pairwise identity | 69.37 |
| Columns | 150 |
| Mean single MFE | -35.37 |
| Consensus MFE | -18.4 |
| Combinations/base pair | 38 / 29 = 1.31 |
| SCI | 0.52 |
| z-score | -2.09 |
| RNA class probability | 0.978109 |
This structure is part of cluster 30696
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 150 Columns: 150 Strand: + Mean pairwise identity: 69.37 Mean single sequence MFE: -35.37 Consensus MFE: -18.40 Energy contribution: -19.15 Covariance contribution: 0.75 Mean z-score: -2.09 Structure conservation index: 0.52 SVM decision value: 1.81 SVM RNA-class probability: 0.978109 Prediction: RNA ###################################################################### >hg17.chr14/35301756-35301897 AAAUGUCAGAGUUCUCGGUCGGACUUGAAAACACUUUUAAAUAAGUCCUUGGCAACCUCCAAAUUAUUCUUGGUGACCUUUAUAUCCUUCUGCCAUACUUGGGAUCAGAAGGGCAUAUAAAAAGAAUCACCUUUUCAACAC ........((.((((.(((((((((((..............)))))))((((......))))............))))(((((((((((((((((....)))...)))))))..))))))).))))))............. ( -31.24) >canFam1.chr8/17275546-17275686 AAAUGUCAGAGUUCUCGGUCAGACUUGAAAACAUUUUAAUACAAGUCCUUGGCAACCUCCAAAUUAUUCUUGGUGACCCUGAUAUCCCUCUGGCCAUAAUCUUGGGACCAGAAGGGCAUAUAGAGUCACCUUUUCAACAC ...(((((((....)).....((((((..............))))))..))))).................((((((.(((.((((((((((((((......)))..)))).)))).)))))).)))))).......... ( -37.44) >mm5.chr12/50974112-50974249 AAAUGUCAGAGUUCUCGGUCAGACUUGAAAACACUUUUGCACAAGUCCUUGGCAAUCUCUAAAUUGUUCUUGGUGACCUUGAUAACCCUUUGAUCAAAACUGAGGUCAGAGGGACAUAUAAAAAAGUCACCUUUCAC .......((((......((((((((((..............))))))..))))...))))...........((((((.((.(((.((((((((((........))))))))))...)))...)).))))))...... ( -35.94) >rn3.chr6/76115691-76115830 AAAUGUCAGAGUUCUCGGUCAGACUUGAAAACACUUUUGAACAAGUCCUUGGCAAUCUCUAAAUUGUUCUUGGUGACCUUGAUAACCCUUUGAUCAAAACUGAGGUCAGAGGGACAUAUAAAAAAGUCACCUUUCAACA .......((((......((((((((((..............))))))..))))...))))....((((...((((((.((.(((.((((((((((........))))))))))...)))...)).))))))....)))) ( -36.94) >galGal2.chr5/33202164-33202299 AGAUGUUGGAGUUCUCGGUCAGACUUGAUAGCAUCUUUUAAACAAGUCCUUGGCAACCUCCAUUUUAAUCUUGGUGAGCUUGUUACCUUCAGGCAACUCUCUCAAUGCCAGAAGGAAAAAAAGAUCACCUCUCGC ((((..(((((......((((((((((...............))))))..))))...))))).....)))).(((((.(((.((.(((((.((((..........)))).)))))))...))).)))))...... ( -36.56) >danRer1.chrUn/359020584-359020698 AAUGUCAGAGUUCUCGGUCAGAUCUGGGUGUUUCUGGGCCCCAGGUCCUUGGCAUUCUCUGUGUUUAUCUUGGUGGUCUGUGUAUCCUGCUGCUAUAAGACUUCAGAGCAGAGG (((((((((....)).....((((((((.(((....)))))))))))..)))))))((((((.....(((.((.(((((..(((......)))....)))))))))))))))). ( -34.10) >consensus AAAUGUCAGAGUUCUCGGUCAGACUUGAAAACA_CUUUUAAA___CAAGUCCUUGGCAACCUCCAAAUUAUUCUUGGUGACCUUGAUAUCCCUCUG__ACCAAA__CUUGAGAUCAGAAGGACAUAUAAAAA_AGUCACCUUU____CAC .......((((......((((((((((..................))))))..))))...))))...........(((((.........(((((((...(((......)))...)))))))..............))))).......... (-18.40 = -19.15 + 0.75)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
