Structure #59770

Summary

Genome/Assembly hg17
Chromosome/Contig chr14
Strand -
Position 35,301,756 - 35,301,897
Number of sequences 6
Organisms human, dog, mouse, rat, chicken, zebrafish
Mean pairwise identity 69.37
Columns 150
Mean single MFE -36.73
Consensus MFE -22.37
Combinations/base pair 46 / 32 = 1.44
SCI 0.61
z-score -1.83
RNA class probability 0.969698

This structure is part of cluster 30696

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 6
 Slice: 1 to 150
 Columns: 150
 Strand: +
 Mean pairwise identity:  69.37
 Mean single sequence MFE: -36.73
 Consensus MFE: -22.37
 Energy contribution: -22.93
 Covariance contribution:   0.56
 Mean z-score:  -1.83
 Structure conservation index:   0.61
 SVM decision value:   1.65
 SVM RNA-class probability: 0.969698
 Prediction: RNA

######################################################################

>hg17.chr14/35301897-35301756
GUGUUGAAAAGGUGAUUCUUUUUAUAUGCCCUUCUGAUCCCAAGUAUGGCAGAAGGAUAUAAAGGUCACCAAGAAUAAUUUGGAGGUUGCCAAGGACUUAUUUAAAAGUGUUUUCAAGUCCGACCGAGAACUCUGACAUUU
(((((.....((((((...((((((((..(((((((...(((....)))))))))))))))))))))))).(((....(((((.((...))..((((((................))))))..)))))...)))))))).. ( -35.29)
>canFam1.chr8/17275686-17275546
GUGUUGAAAAGGUGACUCUAUAUGCCCUUCUGGUCCCAAGAUUAUGGCCAGAGGGAUAUCAGGGUCACCAAGAAUAAUUUGGAGGUUGCCAAGGACUUGUAUUAAAAUGUUUUCAAGUCUGACCGAGAACUCUGACAUUU
(((((.....(((((((((((((.((((.((((((..........)))))))))))))).)))))))))...........((((.(((....(((((((.((......))...)))))))...)))...))))))))).. ( -46.60)
>mm5.chr12/50974249-50974112
GUGAAAGGUGACUUUUUUAUAUGUCCCUCUGACCUCAGUUUUGAUCAAAGGGUUAUCAAGGUCACCAAGAACAAUUUAGAGAUUGCCAAGGACUUGUGCAAAAGUGUUUUCAAGUCUGACCGAGAACUCUGACAUUU
((....(((((((((..((.....((((.(((.(........).))).)))).))..)))))))))....))...((((((.(((....(((((((.(((....)))...)))))))...)))...))))))..... ( -37.20)
>rn3.chr6/76115830-76115691
UGUUGAAAGGUGACUUUUUUAUAUGUCCCUCUGACCUCAGUUUUGAUCAAAGGGUUAUCAAGGUCACCAAGAACAAUUUAGAGAUUGCCAAGGACUUGUUCAAAAGUGUUUUCAAGUCUGACCGAGAACUCUGACAUUU
((((....(((((((((..((.....((((.(((.(........).))).)))).))..)))))))))...))))..((((((.(((....(((((((..((....))....)))))))...)))...))))))..... ( -35.20)
>galGal2.chr5/33202299-33202164
GCGAGAGGUGAUCUUUUUUUCCUUCUGGCAUUGAGAGAGUUGCCUGAAGGUAACAAGCUCACCAAGAUUAAAAUGGAGGUUGCCAAGGACUUGUUUAAAAGAUGCUAUCAAGUCUGACCGAGAACUCCAACAUCU
...((((((((.(((.((..(((((.((((((....))..)))).))))).)).))).)))))..........(((((.(((....(((((((...............)))))))...)))...)))))...))) ( -38.66)
>danRer1.chrUn/359020698-359020584
CCUCUGCUCUGAAGUCUUAUAGCAGCAGGAUACACAGACCACCAAGAUAAACACAGAGAAUGCCAAGGACCUGGGGCCCAGAAACACCCAGAUCUGACCGAGAACUCUGACAUU
((((((((.(((....))).))))).)))........................(((((........(((.(((((...........))))).))).........)))))..... ( -27.43)
>consensus
GUG____AAAGGUGACU_UUUUUAUAUGUCCCUCUGACCUCAAG__UAUGAU__CAGAAGGAUAUCAAGGUCACCAAGAAUAAUUUAGAGAUUGCCAAGGACUUG___UUCAAAAG_UGUUUUCAAGUCUGACCGAGAACUCUGACAUUU
..........(((((((............(((((((...(((......)))...))))))).......)))))))..........(((((.(((....(((((((..................)))))))...)))...)))))...... (-22.37 = -22.93 +   0.56) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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