Structure #59770
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr14 |
Strand | - |
Position | 35,301,756 - 35,301,897 |
Number of sequences | 6 |
Organisms | human, dog, mouse, rat, chicken, zebrafish |
Mean pairwise identity | 69.37 |
Columns | 150 |
Mean single MFE | -36.73 |
Consensus MFE | -22.37 |
Combinations/base pair | 46 / 32 = 1.44 |
SCI | 0.61 |
z-score | -1.83 |
RNA class probability | 0.969698 |
This structure is part of cluster 30696
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 150 Columns: 150 Strand: + Mean pairwise identity: 69.37 Mean single sequence MFE: -36.73 Consensus MFE: -22.37 Energy contribution: -22.93 Covariance contribution: 0.56 Mean z-score: -1.83 Structure conservation index: 0.61 SVM decision value: 1.65 SVM RNA-class probability: 0.969698 Prediction: RNA ###################################################################### >hg17.chr14/35301897-35301756 GUGUUGAAAAGGUGAUUCUUUUUAUAUGCCCUUCUGAUCCCAAGUAUGGCAGAAGGAUAUAAAGGUCACCAAGAAUAAUUUGGAGGUUGCCAAGGACUUAUUUAAAAGUGUUUUCAAGUCCGACCGAGAACUCUGACAUUU (((((.....((((((...((((((((..(((((((...(((....)))))))))))))))))))))))).(((....(((((.((...))..((((((................))))))..)))))...)))))))).. ( -35.29) >canFam1.chr8/17275686-17275546 GUGUUGAAAAGGUGACUCUAUAUGCCCUUCUGGUCCCAAGAUUAUGGCCAGAGGGAUAUCAGGGUCACCAAGAAUAAUUUGGAGGUUGCCAAGGACUUGUAUUAAAAUGUUUUCAAGUCUGACCGAGAACUCUGACAUUU (((((.....(((((((((((((.((((.((((((..........)))))))))))))).)))))))))...........((((.(((....(((((((.((......))...)))))))...)))...))))))))).. ( -46.60) >mm5.chr12/50974249-50974112 GUGAAAGGUGACUUUUUUAUAUGUCCCUCUGACCUCAGUUUUGAUCAAAGGGUUAUCAAGGUCACCAAGAACAAUUUAGAGAUUGCCAAGGACUUGUGCAAAAGUGUUUUCAAGUCUGACCGAGAACUCUGACAUUU ((....(((((((((..((.....((((.(((.(........).))).)))).))..)))))))))....))...((((((.(((....(((((((.(((....)))...)))))))...)))...))))))..... ( -37.20) >rn3.chr6/76115830-76115691 UGUUGAAAGGUGACUUUUUUAUAUGUCCCUCUGACCUCAGUUUUGAUCAAAGGGUUAUCAAGGUCACCAAGAACAAUUUAGAGAUUGCCAAGGACUUGUUCAAAAGUGUUUUCAAGUCUGACCGAGAACUCUGACAUUU ((((....(((((((((..((.....((((.(((.(........).))).)))).))..)))))))))...))))..((((((.(((....(((((((..((....))....)))))))...)))...))))))..... ( -35.20) >galGal2.chr5/33202299-33202164 GCGAGAGGUGAUCUUUUUUUCCUUCUGGCAUUGAGAGAGUUGCCUGAAGGUAACAAGCUCACCAAGAUUAAAAUGGAGGUUGCCAAGGACUUGUUUAAAAGAUGCUAUCAAGUCUGACCGAGAACUCCAACAUCU ...((((((((.(((.((..(((((.((((((....))..)))).))))).)).))).)))))..........(((((.(((....(((((((...............)))))))...)))...)))))...))) ( -38.66) >danRer1.chrUn/359020698-359020584 CCUCUGCUCUGAAGUCUUAUAGCAGCAGGAUACACAGACCACCAAGAUAAACACAGAGAAUGCCAAGGACCUGGGGCCCAGAAACACCCAGAUCUGACCGAGAACUCUGACAUU ((((((((.(((....))).))))).)))........................(((((........(((.(((((...........))))).))).........)))))..... ( -27.43) >consensus GUG____AAAGGUGACU_UUUUUAUAUGUCCCUCUGACCUCAAG__UAUGAU__CAGAAGGAUAUCAAGGUCACCAAGAAUAAUUUAGAGAUUGCCAAGGACUUG___UUCAAAAG_UGUUUUCAAGUCUGACCGAGAACUCUGACAUUU ..........(((((((............(((((((...(((......)))...))))))).......)))))))..........(((((.(((....(((((((..................)))))))...)))...)))))...... (-22.37 = -22.93 + 0.56)