Structure #60823
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr14 |
| Strand | - |
| Position | 53,419,155 - 53,419,273 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 76.85 |
| Columns | 120 |
| Mean single MFE | -31.74 |
| Consensus MFE | -22.04 |
| Combinations/base pair | 50 / 35 = 1.43 |
| SCI | 0.69 |
| z-score | -2.16 |
| RNA class probability | 0.980469 |
This structure is part of cluster 31319
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 76.85 Mean single sequence MFE: -31.74 Consensus MFE: -22.04 Energy contribution: -22.40 Covariance contribution: 0.36 Mean z-score: -2.16 Structure conservation index: 0.69 SVM decision value: 1.86 SVM RNA-class probability: 0.980469 Prediction: RNA ###################################################################### >hg17.chr14/53419273-53419155 AACUUCAGAAUUUAUUGUCUCCCAUUACAUUAUGGGAAACUAAAAAUUCACACGGGUAUUUUAACAUUAAGAAAGCACACCUGUGAGAACAAGUUUGAUGUACAGUAUCUAUCUGUUU .((.(((((((((...((.((((((......)))))).))...)))))).(((((((.((((........))))....)))))))..........))).))((((.......)))).. ( -27.30) >mm5.chr14/38971504-38971386 AACUUCAGAAUGUAUUGUCUCCCGUUACAUGAUGGGAGACAGAGAAGUCACACGGGUAUUUUGGCAUUAAGAAAGUGCACCCAUGAGAACAAGUGUGAUGUACAGUAUCUAUCUGUUU ......(((.((((((((((((((((....))))))))))).....(((((((((((......(((((.....))))))))).((....)).))))))))))))...)))........ ( -38.20) >rn3.chr15/22221408-22221298 AGCUCCAGAAUGUAUUGUCUCCCGUUAACACGAUGGGGGACGGAGAAGUCACACGGCGUUAAGACAGUGCACCCACGAGAACAAGUUUGAUGUACAGUAUCGAUCUGUUU ..(((.....((((((((((((((((.....)))))).(((......)))...........)))))))))).....)))((((.(.((((((.....)))))).))))). ( -28.70) >canFam1.chr8/32834609-32834491 AACUUCAGAAUUUAUUGUCUCCCAUUACAUUAUGGGAAACUAAAAAUUCACACGGGUAUUUUAACGUUAAGAAAGCACACCUGUGAGAACAAGUUUGAUGUACAGUAUGUAUCUGUUU .((.(((((((((...((.((((((......)))))).))...)))))).(((((((.((((........))))....)))))))..........))).))((((.......)))).. ( -27.30) >galGal2.chr5/55219260-55219149 AACCUCAGAAUUCAUUGUUUCCCCUGACACGAUGGGAAACAGCAAAUUCACACGGGUAUAUCCCACAGCGAGGAGCGCACCUGUGGGAACCCGGCCGUUGUAUAUCUGCUU .......(((((..(((((((((..........)))))))))..)))))...(((((...((((((((((.....)))...))))))))))))((.(........).)).. ( -37.20) >consensus AACUUCAGAAUUUAUUGUCUCCCAUUA_CAUGAUGGGAAACAGAAAAUUCACACGGGUAU_UUUAACAUUAAGAAAGCGCACCUGUGAGAACAAGUUUGAUGUACAGUAUCUAUCUGUUU .......((((((.(((((((((((.......))))))))))).))))))..(((((((......((((((((...(((....))).........))))))))........))))))).. (-22.04 = -22.40 + 0.36)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
